Shewanella oncorhynchi: RA178_09240
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Entry
RA178_09240 CDS
T09381
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
sog
Shewanella oncorhynchi
Pathway
sog01501
beta-Lactam resistance
sog01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RA178_09240
01503 Cationic antimicrobial peptide (CAMP) resistance
RA178_09240
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_09240
01504 Antimicrobial resistance genes [BR:
sog01504
]
RA178_09240
Transporters [BR:
sog02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
RA178_09240
Antimicrobial resistance genes [BR:
sog01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RA178_09240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
DUF6286
Motif
Other DBs
NCBI-ProteinID:
WMB74756
UniProt:
A0AA50KHK4
LinkDB
All DBs
Position
2047189..2050284
Genome browser
AA seq
1031 aa
AA seq
DB search
MILTDLSVKRPVFASVISLLLVAFGLVSFDKLPLREYPNIDPPVVSIDTNYRGASAAVVE
SRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISGLLDNLP
DEADPPEVQKANGSDEVIMWLNLVSDQMTTLELTDYTNRYLSDRFSVVDGVARMRIGGGK
VYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLERGYRTAEDF
ANLVITQGEDGYLVKLSDVARVEIGSDEERIMFRGNKEAMIGLGVSKQSTANTLEVARAV
NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMILVIIVIYLFLGSVRAML
IPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP
LKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVLFSSLVALT
LTPMMCSKLLKPSSQDSWLVRKVDGIMTKVSNRYQLSLKSAMAHPILVSILVLVALGSSV
YLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMNEVENRLMPLVETGDIKRLLIR
APRGFGRAADFSNGMAIIVLEDWGKRRPVKEVIVDINKRLANLAGVQAFPVMRQAFGRGV
GKPVQFVIGGPSYEELARWRDIMMQKAAQNPKLLGLDHDYKETKPQLRVVIDRDRAASLG
VSISNIGRTLESMLGSRLVTTFMRDGEEYDVIVEGERDNQNTAADLQNIYVRSERSQELI
PLSNLVTVEEFADASSLNRYNRMRAITIEASLEDGYSLGEALDYMNQLARTYLPAEAVIS
YKGQSLDYQESGSSMYFVFILALGIVFLVLAAQFESYIHPVVIMLTVPLATVGALIGLWL
TGQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVDFDKAIIQASAQRLRPILMTG
ITTAAGAVPLVLAVGAGAETRFVIGVVVLSGILLATLFTIFVIPAAYGLFARNSGSPEAI
AQQLEKELAQD
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatccttactgatctctcggtcaaacgtcccgtatttgcctcagtgatcagcttgctg
ctggtcgctttcgggcttgtctcctttgataaattgcccctgcgcgaatacccaaacata
gatccgccagtggtatctatcgacacgaattaccgcggtgccagtgctgccgtggtggaa
agccgcattacccaattgattgaagacaggatcagtggcgtcgaaggcattcgtcacgtg
agttcatcgagcagtgatggccgctcatcggttaccttagagtttgatattagtcgtaat
attgaagatgcagctaacgatgtgcgcgacaggatctcaggtttactcgacaatttaccc
gatgaagctgatcccccagaagtacaaaaggccaatggcagtgatgaagtgatcatgtgg
ctcaatctcgtgtcggatcaaatgacgaccctagaattgaccgattacaccaaccgttat
ttgtcggaccgcttttcggtggtcgatggtgtggcgcggatgcgtattggtggcggtaag
gtttacgccatgcgcgtttggcttgacagacaagccttggcctctcgcagtttaacggtt
gccgatgttgaggccgcgctcagagctgagaacgtcgagttacctgcaggttcgatagag
tcgaaggagcggcactttacagtgcgactggagcggggttatcgcactgccgaagatttc
gcaaacttagtgatcacccaaggggaagacggttatttagtcaaactgagcgatgtcgcg
cgggtggaaattggctctgatgaagagcggattatgttccgtggcaacaaagaggcaatg
ataggtttaggcgtgtctaaacagtcaaccgccaatacgttagaagtggcgcgcgcagtg
aacgcgctggttgacaaaatcaacccgaccttgccagcgggcatgtcgattaaacgcagc
tacgatagctcagtttttatcgaagcctcgattaaagaagtgtatcaaaccctgttcact
gcgatgattttagtgattatcgtgatttatctgttccttggcagcgtgcgcgctatgttg
atccccgcgatcactgtgccagtgtctctgctcggcacctttattgtgctgtatgcacta
ggttataccattaacctcttgaccttattggcaatgatcctcgccatcggtatggtggtg
gacgatgcgattgtgatgctggaaaacatccatagacgtatcgaagaaggagattcccca
ctcaaagctgctttcctcggtgcgcgtgaagtggcttttgctgttatcgcgaccacactc
gtattggtcgcggtctttatgccaatcactttccttgaaggtgacttaggtaaactcttt
aaagagtttgccgtgaccatgagtgcggccgtgctgttctctagcctagtggcgctcaca
ctcacgcccatgatgtgctctaagttgcttaagccgagctcgcaggattcttggttggtg
cgtaaggtcgacggcataatgacaaaagtgtccaaccgataccaattgtccttaaaatcc
gccatggcccacccgatattggtgtcgattctggtgttagtcgcattagggtctagtgtc
tatttagtccaaaaagtaccgcaagaatttgccccacaggaagaccgtggttcgttattc
ttgatggtcaatgggccacagggcgcgagttacgaatacatagaatcctatatgaatgaa
gtggaaaaccgcttgatgccattggtcgaaacgggtgatatcaaacgtctgctcattcgt
gccccccgtggctttggccgcgcggcggatttctctaacggtatggcaatcatagtactg
gaagactggggtaaacgtcgcccagtaaaagaagttatcgtcgacattaataaacgtctt
gctaatctcgccggggtgcaagcgttccctgtaatgcgccaagcctttggtcgcggcgta
ggtaaacctgtgcaatttgtgattggtggacctagctacgaagagcttgcccgctggcgc
gatatcatgatgcaaaaggcggcacagaatcccaaattattaggattagatcacgattat
aaagagactaagcctcaacttcgagtcgtcatcgacagagacagagccgcgagccttgga
gtgtcgatttcaaacattggccgtacgttggaatccatgctgggctcacgcttagtgacg
acgtttatgcgtgacggtgaagaatacgatgtgatcgttgaaggcgagcgcgataatcaa
aatactgcggcggatctgcaaaatatctatgttcgttccgagcgcagtcaggagcttatt
ccgctgtctaacttagtgactgtggaggagtttgccgacgctagttcgctgaaccgttac
aaccgtatgcgcgcgatcaccatagaagccagtttagaagatggctatagtctgggtgaa
gcccttgattatatgaatcaattggcgcgtacctatttgccagcggaagcggtgattagc
tacaagggccaatccctcgattatcaagagtcgggtagctctatgtacttcgtattcatc
ctcgcactggggattgtattcctcgtgctcgcggcgcagtttgagagttatatccaccct
gtggtgatcatgcttactgtgccgctggctaccgtcggcgccttaattggtttgtggctc
acggggcagagtctcaatatttacagtcagataggcattattatgctggtcgggttagcc
gcgaaaaatggcatcttgattgtcgagtttgctaaccaattgcgggataaaggcgttgat
tttgataaggccattattcaagcttctgcgcagcggttacgacctatcttaatgacaggg
atcaccactgccgctggcgccgtgccattggtattggcggtaggcgcgggtgctgaaact
cgttttgtgattggtgtagtggtgttgtctgggattttactggcaaccttattcactatc
ttcgtgatccccgccgcttatggactctttgcccgcaacagcggatcgcccgaagctata
gcccaacagttagaaaaagaattagcccaagactaa
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