Shinella oryzae: K6301_24340
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Entry
K6301_24340 CDS
T08112
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
soj
Shinella oryzae
Pathway
soj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K6301_24340 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_24340 (ligD)
Enzymes [BR:
soj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K6301_24340 (ligD)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K6301_24340 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UPA27030
LinkDB
All DBs
Position
pZ25:complement(1768318..1769370)
Genome browser
AA seq
350 aa
AA seq
DB search
MTKPPRSKPLLRDTEAPIRSKPRRKRNPAQPQLLFDPMPDRVEPALAELKAHPPNGDQWS
WELKWDGYRLTVHIEPTGVRILTRGGHDWTHRFPDIAEAARGLGPATMIIDGEAVVLDEE
GRPDFGLLQKSLGASGKAAGRRASDAILYAFDLIYLDGHDLRSVEYRSRRHLLEDTLNGK
DGAIRLSETIDADANVLLEHVCGLGLEGIVGKHLDQPYRSGRTGDWVKVKCVQSEAFMVI
GYEPSTASPGGFASLVLAAYRGDQFVHVGNVGTGFKEAEMTRLRKMLDKLRWKRKQPPVP
YAGKADIVWVAPTLIAEIELRAWTGDRKLRHASYKGLRERQDNADVYKLD
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagcccccgagatcaaaaccgctccttcgtgataccgaagccccgatccgctca
aagccgcggcggaagcgcaatccggcacagccacagcttctgttcgatccgatgcctgac
cgcgtcgagccggcgctcgctgagctgaaggcgcatccgcccaacggtgatcagtggagc
tgggagctgaagtgggatggctaccggctgaccgttcatattgagccgacaggcgtccgc
atcctcacccgcggcggccacgactggacacatcggtttcctgatatcgcagaggctgcc
cgggggcttgggcccgcgacaatgatcatcgatggcgaggcggtggtgcttgatgaggaa
gggcggccggacttcgggctgctgcagaaatcgttgggcgcttccggcaaagccgctggc
cgtcgtgcgtctgatgccatcctctacgccttcgatcttatctacctcgatggtcacgat
ttacgcagcgtcgagtaccgatcgcgccgccatcttcttgaggacacgctgaacggcaaa
gatggcgccatccgcctgtcggaaaccatcgatgccgacgcaaacgtcctcctcgaacat
gtgtgcggccttggcctcgaaggcatcgtcggcaagcacctcgatcagccctatcgttcg
ggccgcaccggcgactgggtcaaggtgaaatgcgtgcaaagcgaagcgttcatggttatc
ggctatgagccatccaccgcatcgccgggcggcttcgcatcgctggtgcttgccgcctat
cgtggcgaccagttcgtccatgtcgggaacgtcggcacaggcttcaaagaagccgagatg
accaggttgcgcaagatgttggacaagttgcgctggaagcgaaagcagccgccagttccc
tatgccggaaaggcagacatcgtctgggtcgcgccgaccttgatcgccgagatcgagctc
cgcgcctggaccggagaccgcaaattgcggcatgcttcctacaagggcttgcgggaacgg
caagacaatgccgacgtttacaagctcgattag
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