Solimonas sp. K1W22B-7: D0B54_06680
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Entry
D0B54_06680 CDS
T05591
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sok
Solimonas sp. K1W22B-7
Pathway
sok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0B54_06680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sok03400
]
D0B54_06680 (mfd)
Enzymes [BR:
sok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0B54_06680 (mfd)
DNA repair and recombination proteins [BR:
sok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0B54_06680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
AAA_30
UB2H
LSDAT_prok
IstB_IS21
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AXQ28385
UniProt:
A0A346MYJ8
LinkDB
All DBs
Position
complement(1445887..1449228)
Genome browser
AA seq
1113 aa
AA seq
DB search
MTPDSPPQTPLTGAATALAAVELALAHDAPVVVLAGNEQQAHRLEEDLRFFLAGRLPLVH
LPDTEILPYDQFSPHQEILSDRLRALARLPQLGRGLLLVTADALIHRLPPRDWLSGRSFQ
LGLGDKLDPHAFRERLVASGYQSVSEVQTQGEFAVRGALVDLFPMGSNTAFRIDLFDDEI
ETIRSFDPETQRSLDKVDEIRLLPAREFPTDREGIETFRRRYREYFPGDPARSQIYSEVS
RKLMPGGIESYLPLFFNHTHGLLDYLPPGAMLAPVADMEQALQTDWQQIEERYERYRGDI
ERPLMKPADLYQEPEQALREMALYEVRKPGSDAHALPAGVDELRTWLKTATARVLFIAES
PGRREAVLAWLKPLGILPREYKDWAEFATDSKRYGILLGPLQDSFHVPGDSIAVLSEAQL
FGARTPMHTRRGRARIRDPETILRDLSTLSLGSPVVHVQHGVGRYRGLEKLDAGGIVAEY
LLLEYADGKRYVPVGSLNLIHRYTGSEDDKAPLHALGSERWAKAQAKAREKAADVAAELL
QIQARRAAKPGMALEFDQADYERFCESFPFTPTHDQQKAIDAVLDDLRSEKTMDRVVCGD
VGFGKTEVALRACFAAARAGRQVCLLAPTTLLAEQHAKNFSDRFAGWPIRVASLSRMRTG
KEQTAMLKQLESGALDIVIGTHRLLQADVKFKNLGLVVVDEEHRFGVRHKETLKNLRAEV
DLLTLTATPIPRTLNMSLAGLRDLSIIATPPPSRIAIKTAVHEWNNTLVYEACLRELRRG
GQVYILHNEVKDIEQFSRNIQELVPEGRVRYAHGQMRERDLEQVMLDFYHQRFNILVSTT
IIESGIDVPTANTIVIDRADTLGLAQLHQLRGRVGRSHHRAYAYLMVPSKRSLSVDAQKR
LDAIETLGDLGSGFALATHDLEIRGAGELLGEDQTGQIEEVGFTMYAELLARAVKAIRSG
KIDDSPFGRSDCEVDLGASALIPDDYIPDVHARLTLYKRIAEAATDDELDELKVEMIDRF
GLLPAAAERLFDATRLRIAAQALGLSRLRAGARSAAFDFGPQTTIDPVKMIRLIQTQPKY
WKLEGQKRLHWYANLEKVEERAEMLLKAMGMLK
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgattcacccccacagaccccgctcaccggcgccgccacggcgctggccgcc
gtggagctggcgctggcccacgatgccccggtggtcgtgctggccggcaacgagcagcag
gcccaccgcctggaggaagacctgcgcttcttcctcgccggccgcctgccgctggtgcac
ctgcccgataccgagatcctgccctacgaccagttctcgccgcaccaggagatcctgtcg
gatcgcctgcgcgcgctggcgcggctgccgcagctgggccgcggcctgctgctggtcacc
gccgacgccctgatccaccgcctgccgccgcgcgactggctgtccgggcgcagcttccag
ctcggcctgggcgacaagctcgatcctcacgccttccgcgagcgcctggtcgcctccggc
taccagtcggtgtccgaggtgcagacccagggcgagttcgccgtgcgcggcgccttggtg
gacctgttccccatgggcagcaacaccgccttccgcatcgacctgttcgacgacgagatc
gaaacgatccgcagcttcgacccggaaacccagcgcagcctcgacaaggtcgacgagatc
cgcctgctgccggcgcgcgagttccccaccgaccgcgagggcatcgagaccttccgccgg
cgctaccgcgaatacttccccggcgatccggcgcgttcgcagatctactccgaggtcagc
cgcaagctgatgccgggcggtatcgagtcctacctgccgctgttcttcaaccacacccac
ggcctgctcgactacctgccgccgggcgccatgctggcgccggtcgccgacatggagcag
gcgctgcagaccgactggcagcagatcgaggagcgctacgagcgctaccgcggcgacatc
gagcggccgctgatgaagccggccgatctctaccaggagcccgagcaggcgctgcgcgag
atggcgctgtacgaggtgcgcaagcccggcagcgacgcccacgccctgcccgccggcgtc
gacgaactgcgcacctggctcaagaccgccaccgcgcgtgtgctgttcatcgccgagtcg
cccggtcgccgcgaggccgtgctggcctggctcaagcccctgggcatcctgccgcgcgag
tacaaggactgggccgagttcgccaccgactccaagcgctacggcatcctgctgggcccg
ctgcaggacagtttccacgttcccggcgacagcatcgccgtgctgtccgaggcgcagctg
ttcggcgcccgcacgccgatgcacacgcgccgcggccgcgccaggatccgcgacccggaa
accatcctgcgcgatctctccacgctgtcgctgggctcgccggtggtgcacgtgcagcac
ggcgtgggccgctaccgcggcctggagaagctcgacgccggcggcatcgtcgccgagtac
ctgctgctggagtacgccgacggcaagcgctacgtgccggtgggctcgctgaacctgatc
caccgctacaccggcagcgaggacgacaaggcgccgctgcacgccctgggctcggagcgc
tgggccaaggcgcaggccaaggcgcgcgagaaggctgccgacgtcgccgccgagctgctg
cagatccaggcgcgccgtgccgccaagcccggcatggccctggagttcgaccaggccgat
tacgagcgcttctgcgagagcttcccgttcacgcccacgcacgaccagcagaaggcgatc
gacgccgtgctggacgacctgcgcagcgagaagaccatggaccgcgtggtctgcggcgac
gtcggcttcggcaagaccgaggtggcgctgcgcgcctgcttcgccgccgcccgcgccggc
cgccaggtctgcctgctggcgcccaccacgctgctggccgagcagcacgccaagaacttc
tccgaccgcttcgccggctggccgatccgcgtcgccagcctgtcgcgcatgcgcaccggc
aaggaacagacggcgatgctcaagcagctggaaagcggcgcgctggacatcgtcatcggc
acgcaccgtctgctgcaggccgacgtgaagttcaagaacctgggcctggtggtggtggac
gaggagcatcgctttggcgtgcgccacaaggaaacgctgaagaacctgcgcgccgaggtg
gacctgctgacgctcaccgccacgccgatcccgcgcacgctcaacatgtcgctggccggc
ctgcgcgacctgtccatcatcgccacgccgccgccctcgcgcatcgccatcaagaccgcg
gtgcacgagtggaacaacacgctggtgtacgaagcctgcctgcgcgaactgcgccgcggc
ggacaggtctacatcctgcacaacgaggtcaaggacatcgagcagttctcgcgcaacatc
caggaactggtgcccgaaggccgcgtgcgctacgcccatggccagatgcgcgagcgcgat
ctggaacaggtgatgctggatttctaccaccagcgcttcaacatcctggtcagcaccacg
atcatcgaatccggcatcgacgtgccgaccgccaacaccatcgtcatcgaccgcgccgac
accctgggcctggcgcagctgcaccagctgcgcggccgcgtcggccgctcgcaccaccgc
gcctatgcctacctgatggtgccgtccaagcgctcgctcagcgtggacgcgcaaaagcgc
ctggacgcgatcgagaccctgggcgacctgggctcgggcttcgcgctggccacgcatgat
cttgaaatccgcggcgccggcgagctgctgggcgaggaccagaccggccagatcgaggaa
gtgggtttcaccatgtacgccgagctgctggcgcgcgcggtcaaggcgatccgctccggc
aagatcgacgacagccccttcggccgctccgactgcgaggtggacctgggcgcctcagcc
ctgatccccgacgactacatccccgacgtgcacgcgcgcctgacgctctacaagcgcatc
gccgaggccgccaccgacgacgaactggacgagctgaaggtggagatgatcgaccgcttc
ggcctgctgcccgcggcggcggagcgcctgttcgacgccacgcgcctgcgcatcgccgcc
caggccctgggcctgtcacgcctgcgcgccggcgcgcgctcggccgccttcgacttcggc
ccgcagacgacgatcgacccggtgaagatgatcaggctgatccagacccagcccaagtac
tggaagctggaaggacagaagcgcctgcactggtatgccaacctggagaaggtggaggag
cgggcggagatgttgttgaaggcgatggggatgctgaagtag
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integrated database retrieval system
