Schizosaccharomyces osmophilus (fission yeast): SOMG_01924
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Entry
SOMG_01924 CDS
T09274
Symbol
cdc17
Name
(RefSeq) ATP-dependent DNA replication ligase Cdc17
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03030
DNA replication
som03410
Base excision repair
som03420
Nucleotide excision repair
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOMG_01924 (cdc17)
03410 Base excision repair
SOMG_01924 (cdc17)
03420 Nucleotide excision repair
SOMG_01924 (cdc17)
03430 Mismatch repair
SOMG_01924 (cdc17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
som03032
]
SOMG_01924 (cdc17)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_01924 (cdc17)
Enzymes [BR:
som01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SOMG_01924 (cdc17)
6.5.1.6 DNA ligase (ATP or NAD+)
SOMG_01924 (cdc17)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
SOMG_01924 (cdc17)
DNA replication proteins [BR:
som03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
SOMG_01924 (cdc17)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
SOMG_01924 (cdc17)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
SOMG_01924 (cdc17)
NER (nucleotide excision repair)
Other NER factors
SOMG_01924 (cdc17)
MMR (mismatch excision repair)
Other MMR factors
SOMG_01924 (cdc17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
80875406
NCBI-ProteinID:
XP_056035265
LinkDB
All DBs
Position
1:join(4222553..4222635,4222674..4223202,4223255..4224973)
Genome browser
AA seq
776 aa
AA seq
DB search
MRDIFRHLRHFRRALWLKPMSGRQSNISKFFTLGPEEARKKRTFTPPTVSENENNSQTIK
KQENVTKIHKNDGITPNGEKRTANESEIPKEEDTDATNTVEVKRYKVNGHSSASSSSSPS
AAISEGDTTPSDIPPIAETPLESTKKQEKKKSHATFADMVSTFTKIEKTSKRLEIIDIMG
TYFFSMLRNHPEDLLTSVYLSINKLGPDYSGIELGIGESIIMKAVAESTGQTLQQIKQAF
HKVGDLGLVAQASRQNQPTMFQPAALTLPFLFDSLKSIAQMSGNQSQNRKIGLIKRLLSS
CQGAEPKYLIRALEGKLRLQLAEKTILVSLANACAQYHADKKQVQLSQSDRVHAEQTLRD
VYSQLPSYDIIVPQLIEHGVENLRETCKLTPGVPTKPMLAKPTKQFSEVLDTFDQATFTC
EYKYDGERAQVHYTDDGKFYVFSRNSEDMSVRYPDIMASVSKWRKPEAKNFILDCEAIAW
DKEENRILPFQKLATRKRKDVKLEEIKVRAGLFAFDILYLNGHSLLDAPFSERRKHLYSM
FQPATGEFDFAKHSDQQSVESIQEFLEESVKDSCEGLMVKMLEGPESRYEPSKRSRHWLK
IKKDYLSGVGDSLDLIVIGAYHGRGKRTSVYGAFLLGCYDPDSETVQTVCKLGTGFSEEQ
LEHFHRQLSQIVVPKKKDLYSHSEAPPHQPDVWFEPKYLWEVLTADLSLSPVYKAAIGYV
QEDKGISLRFPRFVRVREDKNWEDATTSEQVSEFYRSQIVHSQTSARASSPNVEDY
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagagatatcttcagacacctacgacactttaggcgcgctttatggttaaaacccatg
tcaggaaggcaatctaatatcagcaagttcttcactttgggtccagaagaagcgcgtaaa
aaacgaacattcactcctccaacggtttctgaaaatgaaaacaattctcaaacaataaag
aagcaagagaatgttacaaaaattcataaaaacgatggaataacccctaacggagagaag
cggacagcgaacgagtcagagattccgaaagaggaggatacagatgcgacaaacactgtg
gaagtcaaacgttataaggtcaatggccattcatcagcttcatcttcttcctccccatct
gctgccatttctgagggagacaccactccatctgatattcctcctattgctgaaacacca
ctagagtctacaaaaaaacaggaaaagaaaaagtctcacgcaacgtttgcggacatggtt
tccactttcacgaaaattgagaaaacttcaaaacgtttggagatcattgatattatgggt
acttactttttttcaatgctgcgtaaccatcctgaggatttacttacttcggtctatttg
agtattaataagctgggtccagattattcaggaattgaacttggcattggtgaaagtatc
atcatgaaagctgttgccgagtcgactggccaaacccttcaacaaattaagcaagcgttt
cataaagtgggagatttgggccttgttgcacaggcatcccgccaaaaccagccaacaatg
tttcaaccagctgctctgactctaccttttctatttgattctctaaagtcgattgcgcaa
atgtctggaaatcaatcacaaaatcgaaaaatcggtttgatcaagcgattgctgagctct
tgtcaaggtgccgagccaaaataccttatcagagcccttgaaggaaagttacgtctccaa
ttagcagagaaaaccattcttgtttccctggccaatgcctgtgcacagtaccatgctgat
aaaaaacaagttcaactatcccaatcggaccgcgtccacgctgaacagactcttcgcgac
gtttattctcaactaccttcatacgacattattgtacctcaactgattgaacatggagtc
gagaacctacgagaaacttgtaagctcacccctggggttcctacaaagcccatgcttgca
aaacctaccaaacagttttccgaagttttggatactttcgaccaagccacttttacttgc
gaatataaatacgacggagagcgtgctcaagttcattatactgatgacggaaaattctac
gtattctctcgaaattccgaagacatgtctgtccgttatcccgatatcatggcgtctgtg
agcaaatggagaaaaccagaagctaaaaactttatcctcgactgcgaagctattgcttgg
gataaggaagaaaacagaattttaccctttcaaaaattggcaacccgtaaaagaaaagac
gtaaagttggaagaaatcaaagttcgagctggtctttttgcttttgatattctctatcta
aacggtcattctttgctagatgctccgttttcagagcgtcgaaagcacttatattcaatg
tttcaaccagctacaggagagtttgattttgccaagcacagtgatcaacaatctgttgag
tcaattcaggaatttcttgaagaatctgttaaagattcttgtgaaggtcttatggtcaaa
atgcttgaaggaccagaatctcgttatgaaccgtccaaacgatctcggcattggttgaag
attaagaaagattacctttcaggtgttggcgactcacttgatttgatcgttattggtgct
tatcatggaagaggtaagagaacttctgtatatggtgcttttcttttgggttgctatgac
cctgattcagagactgtccaaacagtttgcaaattaggtactgggttttcagaagagcaa
ttggaacatttccaccgccaattgagccaaatagtcgttccaaaaaagaaagatttgtat
tctcatagtgaggctcctcctcatcagcctgacgtttggtttgagccaaagtatttgtgg
gaggttctgactgccgatttatcactttcccctgtctataaagctgccattggttatgtt
caagaggataaaggaattagtcttcggttccctcgatttgttcgagtgcgcgaagacaaa
aattgggaggacgctacaactagcgaacaggtttctgagttttaccgctctcagatagta
catagtcagacttcagcacgtgcatcatcgcctaatgtggaagactattaa
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