Schizosaccharomyces osmophilus (fission yeast): SOMG_02778
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Entry
SOMG_02778 CDS
T09274
Symbol
upf3
Name
(RefSeq) up-frameshift suppressor 3 family protein
KO
K14328
regulator of nonsense transcripts 3
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
som03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_02778 (upf3)
03015 mRNA surveillance pathway
SOMG_02778 (upf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_02778 (upf3)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SOMG_02778 (upf3)
mRNA cycle factors
P-body specific factors
SOMG_02778 (upf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
80876258
NCBI-ProteinID:
XP_056038749
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All DBs
Position
2:join(584170..584327,584393..584499,584542..585095)
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AA seq
272 aa
AA seq
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MVPPTSAKTRLPCKLLVHNLPDTLPEEIFLKSIASFHPFINWHRYHQGKRQNPPQPNIPS
FAYLKFRSESHVHDFFRFYQGHVFVDKDEHVYRALLLVAPFQKVPPVKLKPDSLNGTIED
DPVFKTFVDKWNESLIPPPPPSPSHYTQNTSTPLLHYLAEKRGTTGTSPKPSKSKKEKKQ
RSKKSKLASSSSKQATPSDHSTGQNPSQSLEAKEPVKQDSVPSKPKSKKKAKPRKSTKVA
SSTSTTDSTPKPDESAKAVPKKISPKKKEASK
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggttcctcctacatctgcaaaaacacgattaccatgcaagctactcgttcataatctc
ccagatacacttccagaagaaattttcttaaagtccatagcgtcgtttcatccttttata
aactggcaccggtatcatcagggaaaaagacaaaatccacctcaacctaatattccttct
ttcgcatatctaaaattccgatcggaatctcacgttcatgacttttttcgcttctatcaa
ggacatgtttttgttgacaaagatgaacatgtctatcgtgctttgctactagttgctcct
tttcaaaaagttccacctgttaaattgaagcccgactctttaaatggaaccatcgaagat
gatcccgtttttaaaacttttgtggataagtggaatgagagtttgatacctcctccacct
ccttcgccttctcattatacgcaaaatacttcgactccgttgcttcattatttagcagaa
aaacgtgggaccactggtacatctccgaaacccagtaagtctaagaaggaaaaaaagcaa
aggtctaaaaaaagtaagctagcatcttcttcctcaaagcaagctactccctcagatcat
tctacgggccagaatccttcgcagtctttggaggcaaaagagcctgtgaagcaagactca
gttccctcaaaacctaagagcaaaaagaaggcgaaaccaagaaaatctacaaaagttgcc
tcgtctacgagtacaacagattcaacacctaaaccagatgaaagtgctaaagcagtaccc
aaaaaaatatcacccaaaaaaaaagaagcttcaaaataa
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