KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_04233
Entry
SOMG_04233        CDS       T09274                                 
Symbol
ssl1
Name
(RefSeq) transcription factor TFIIH complex subunit Ssl1
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03022  Basal transcription factors
som03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SOMG_04233 (ssl1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    SOMG_04233 (ssl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:som03021]
    SOMG_04233 (ssl1)
   03400 DNA repair and recombination proteins [BR:som03400]
    SOMG_04233 (ssl1)
Transcription machinery [BR:som03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     SOMG_04233 (ssl1)
DNA repair and recombination proteins [BR:som03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     SOMG_04233 (ssl1)
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA
Other DBs
NCBI-GeneID: 80877709
NCBI-ProteinID: XP_056039485
LinkDB
Position
3:complement(join(391788..392838,392882..393099))
AA seq 422 aa
MSKADKNYDSDKSESEDEQQNGRVSNKGRKHDDNEGYTWEGEYQRSWDIVQEDAEGSLIG
VIAGLINAGKRKRLLRDTTPLRRGIIRHMVLVLDLSSAMEERDFHHKRFELQIKYAVEFV
MEYFEQNPISQLSIIGVKDGIAQRVSDLHGNPQSHIQKLKSLRDYSGNFSLQNALEMARA
SLSHIASHGTREVLIIFGSIFSSDPGDIFRTIDALVSDQIRVRIVGLAAEVAICREICDR
TNSSSTNAYGVVLSEQHFRELLLESTIPPATDSSKTADSSLVMMGFPSKVVEQSPSLCTC
HSLPSRGGFHCPRCKAKVCTLPIECPSCKLVLILSTHLARSYHHLFPLKNWIDLPWSAKP
TSSHCFACQVPFPKASEASDQEQTASSMRFECPSCKLHFCIDCDIFAHEQLHECFGCQCS
GN
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgagtaaagcggataaaaattatgattctgacaagtctgaaagcgaagatgaacagcaa
aacggaagagtgagcaataaaggacgcaaacacgatgataatgaaggatatacttgggaa
ggagaatatcagcgttcatgggatatcgttcaagaagatgctgaaggaagtttaattgga
gtcattgcaggattgataaatgctggaaaaagaaaaagattgcttcgtgacacaacacct
ttgcgaagaggaatcattcgtcacatggttttggttttagatctaagctctgcaatggaa
gagcgagatttccatcataaacgatttgaattacaaattaaatatgcagttgagtttgtc
atggaatatttcgaacagaatcccatttctcagctgtcaattattggcgtaaaagatggt
atcgctcaacgtgtttccgatttgcatggaaatccgcaatcccacatccaaaaattaaag
tcgcttcgcgattatagtggaaatttttctcttcaaaatgctttggaaatggccagagcg
tctttatcccacattgcttctcatgggacaagagaggtgttaattatctttggttctatc
ttttcttctgatcctggtgatatctttcgaacaattgatgctcttgtttccgaccaaatc
cgggttcggattgttggtcttgctgctgaggttgctatctgccgtgaaatatgtgaccga
actaatagctcttctacaaatgcatatggtgtggttttaagtgaacaacactttcgtgaa
ctgcttttggagagcacaattcccccagcaacggattcttcaaaaaccgctgactcctcc
ctagtaatgatggggtttccttcaaaagtagttgagcaatctccaagtttatgtacttgt
cattcattaccctctcgtggtggcttccattgtcctcgttgtaaagcaaaggtttgcact
ttgcccatagaatgtcccagttgtaaactagtcttgattctatccacccatctcgctagg
tcctatcatcatttatttcctttaaaaaactggatagacttaccttggtctgcaaaacct
acttcgtcacattgttttgcttgtcaagttccttttcccaaagcttcagaagcgtctgac
caggagcagaccgcatcttccatgcgttttgaatgtccttcttgtaaactgcatttttgt
atcgattgcgatatatttgcccatgaacaattacatgaatgttttggctgccaatgctcc
ggaaattaa

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