KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_04304
Entry
SOMG_04304        CDS       T09274                                 
Symbol
lig4
Name
(RefSeq) DNA repair ligase Lig4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SOMG_04304 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:som03400]
    SOMG_04304 (lig4)
Enzymes [BR:som01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SOMG_04304 (lig4)
DNA repair and recombination proteins [BR:som03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     SOMG_04304 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N RNA_ligase DNA_ligase_A_C BRCT_2 BRCT mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 80877780
NCBI-ProteinID: XP_056039040
LinkDB
Position
3:complement(join(547080..547158,547203..547595,547639..547747,547788..547919,547959..548083,548132..548270,548317..548474,548522..548581,548616..548712,548757..548778,548827..548910,548950..549155,549203..549736,549784..549869,549908..550004,550052..550151,550198..550260,550343..550353,550398..550632))
AA seq 909 aa
MDSFESGTGIVKPRNHSEPLRFYDFVINLLEPLQKIGKTRKSKSSGIDPYEQKRKIISSY
FTKWRQQVGQDLYPLLRLMLPDLDRERGSFGFKEFGLGKLFIRAMHLSSNSEDAKALRNW
RSSGSRHVGNFTAMLQDVLERRAYRTFPSSFTIGDINNLLDHLAEATSEEERGSVLEKFY
NSLSPLEMRWLITILLKIRKYGTSEKFILSVFHPDAARLYRLCSSLKRIAWELYDPTKSL
SELDTDVEVFSCFQPQLANFKKNTLDFVVDAMHDEPFWIEEKMDGERIQLHMSSGKFQFY
SRNARTYTDVYGNSYHDENSKLTQYIIGAFDERVSQVILDGEMVTWDPILETIIPYGSLR
STFDSSSTHPTYYPYYIVFDILFLNGKSLIRHSLEARYRILKKVIVRESRRMCVLSHKIG
KTVGDIDKELRQTILEGSEGLVIKKPSGTYRLGERMDDWIKVKPYYLEGFGEDLDCLILG
GYYGRGKQSKQASSFLCGLRIDHAPGEEPYQRFQSFVRVGGGFSYFDRDIIRKETEGKWK
PWSSEALEFFELAGSRQEFEKPDVWIHPKDALVLQIKAAEVVVSNRFKTTYTLRFPRLEK
IRLDRNWEDALSINEFFQLKNFAENQEKDVYHVEKKRKVNKKKQPEKKLLHQISSPIKQS
TLLSNMFQGLHFVVLPPSKVEKSKQELESIIISNGGTIHQTVSSVPEGQMILLADKISAR
VLVEEKKGMCLICRPEWIIDSTIKGKKVTERPYLLFKKQTKYSWEKALESLSNLSLSELS
TEVRRSNWKNNKRNLLSSKKLSAKEISFPGAFPLSHISAYLDDSGFETTKNTTLTRSQYQ
LAETILTWNGASVQSTFSSKELTHIVMFSNDQDRMAYLQRACEFHQIKPEIVNYQWLLRI
WKDVKSDSV
NT seq 2730 nt   +upstreamnt  +downstreamnt
atggactcgtttgaatcaggtacaggaatagttaagcctcgcaatcattctgagccattg
aggttttacgattttgtgataaatttgttggagccattgcaaaagataggaaaaactaga
aagtcgaaaagctcgggaatcgacccctatgaacagaaacgaaagatcatttctagttat
ttcaccaaatggcgacaacaagtaggacaagatttatatcctttattacgtctaatgttg
cctgatctggacagagaaagaggttcgtttgggttcaaagaatttggtttgggaaaacta
ttcatcagggctatgcacctaagctcaaattcagaagatgccaaagcgcttcgaaactgg
cgaagttctggttcccggcatgttgggaattttactgcgatgctccaagatgtgttggaa
agacgggcttatcgaacctttcctagctcattcacaattggtgatatcaataatttatta
gaccatttggcagaagctacttctgaagaagaaaggggttccgttctagaaaaattctac
aactctttaagcccgcttgaaatgcgttggctaattactatattacttaaaatcagaaag
tatggaacctcagaaaagtttatattgagtgtttttcatccagacgcagctcgcttatat
cgtctctgcagttctttaaaacgcattgcttgggaactttatgatcccactaaaagtcta
agtgaattggacacagatgttgaagtgtttagttgttttcagccacaattggccaatttc
aaaaaaaatactcttgattttgtcgtggatgccatgcacgatgaacccttttggattgaa
gaaaagatggatggagaacgcatacaattacatatgagttcgggaaagtttcagttttat
agtcgaaatgccaggacgtatacagatgtttacggcaactcataccatgatgaaaactca
aagcttacgcagtatattattggagcttttgatgaacgggtctctcaagttatcttggat
ggtgagatggtcacttgggatccaattttagagaccataattccttatggtagcttgagg
agtacgtttgattcttcgtcaactcatcccacatactatccttattatattgtgtttgac
atactttttcttaatggaaagtcattaattaggcactcgctcgaggcaaggtataggatt
ctcaaaaaagtgattgttcgcgagtcccgaagaatgtgcgttctttctcataaaattgga
aaaactgttggcgatatagataaagagttacggcaaacgatacttgagggatcagagggt
ttggtaataaagaaaccttctgggacttatcgattaggagaacgaatggatgattggata
aaggtcaagccgtactacttggaaggattcggagaggatttggattgtcttattctaggt
ggctactatggacgtggtaaacaatctaagcaggcttcttcttttttatgcggtcttcga
attgatcatgctcctggggaagagccgtatcaaaggttccaatcgtttgtccgtgttgga
ggtggattttcttacttcgaccgtgatattatccgaaaggaaacagaaggaaaatggaag
ccctggtcttcagaagcattggagttttttgaattagccggtagccgacaagaatttgag
aaacccgacgtttggattcatcctaaagatgcattggttcttcaaattaaagctgccgag
gttgttgtttctaatcgatttaaaacaacgtatacattgcgatttcccagactggaaaaa
attcgattggatcgaaactgggaagatgctctatctataaacgaattctttcaattaaaa
aattttgctgaaaatcaggaaaaggatgtctatcatgttgaaaagaaaagaaaagtcaac
aaaaagaaacagccagagaaaaaacttttgcatcaaataagtagtccgataaagcaatcc
actctgctgtctaacatgtttcaaggtctacatttcgttgtccttcctccgtcaaaggtt
gaaaaatcaaagcaggaattggaaagcataattatttccaatggtggaacaattcatcaa
acagttagttctgttccagaaggccaaatgatattactagcggataagatttcagcacga
gtacttgtcgaagagaaaaaaggaatgtgtttaatatgccgacctgaatggattatcgac
agtacgataaaaggaaagaaggttactgaacgaccataccttctttttaaaaaacagaca
aaatattcctgggagaaagctttagaaagcctaagcaatctaagcctttcagaattatcg
actgaagtgcgcagatcaaattggaagaacaacaaaagaaatttattaagttcaaagaaa
ctttcagcgaaggaaatatcatttcctggagcattccctctctctcatatatctgcttac
ctggacgacagtggattcgaaactacaaagaatactactcttacaaggtcgcaatatcaa
ttggcggagactatactaacgtggaatggagcttctgtccaaagtaccttttcttccaag
gaattaacacatatagttatgtttagcaatgaccaagatcgcatggcatatctacaacgg
gcttgtgaatttcatcaaatcaagcctgaaatagtgaattatcaatggcttttacgaata
tggaaggacgtaaaatccgacagcgtttga

DBGET integrated database retrieval system