Schizosaccharomyces osmophilus (fission yeast): SOMG_04941
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Entry
SOMG_04941 CDS
T09274
Symbol
ski3
Name
(RefSeq) Ski complex TPR repeat subunit Ski3
KO
K12600
superkiller protein 3
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04941 (ski3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04941 (ski3)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SOMG_04941 (ski3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_8
TPR_17
TPR_11
TPR_16
TPR_14
TPR_22
TPR_12
TPR_9
PPTA
ANAPC3
RPN7
PknG_TPR
Wzy_C_2
TPR_20
CoV_peptidase
T7SS_EccA1_N
Ribosomal_L36e
UreF
Motif
Other DBs
NCBI-GeneID:
80878405
NCBI-ProteinID:
XP_056039244
LinkDB
All DBs
Position
3:complement(2018423..2022520)
Genome browser
AA seq
1365 aa
AA seq
DB search
MAKPALKAAREALSTKDYEETITQCEKALSFDSENYNAYVFLGVANFSLSKELEAKKAYQ
NAIELDDKPLLAWQGLWNLQEKFKDIHGLHQSTEVLAYKLMEANESEKCLSFVKKYLDLV
REQGSKPDQIKALSLLTPSQGQLYQFLEGRIEPVQSLYMQMADLQEFLDHDYYQREINKR
KSRLGARLDQVIRDVEKEIMDNSPIENIYMEIINWSQDDEIRRLTETKLLYMYLKRLYAS
DSQGKPIWQNKVWELVQGMVTLHIPEPTAWTIYLEWQDHSNIDQLNSGEVTEFCTLFSEN
PLSKALAAIQKSDYWMETHPPEGSESDDSPSKQNENYDANQSKDNLLSQDQVLSILTQAY
QECPQSLLIAEVYTQYCVYLKEYTDVVQLSLSALNTLKKTESDTGLQYQELPYVLSLFLA
IGYSHYEVPRYLLQAGELYKKVIAHVPDNYSALIGLAGVQMENEQYGDAAQTLKSVLREN
PEDPCLSQLSWCYYMLGDLDKAMEQVQFCLRILQGKSKNKPALAEAYYRFGIYMTKSKIE
NYEEESFSAFVSSLRCEPNFASTYTELGHYYKNVHDTSRAMKCYQKAFELEASQTDAAEE
LAKMFAEAEEWELVEVISKRVLSTSQNDLKRKRKFNWHHKSLGVFQLHSKNFQTAIVHFQ
AALRIFPKDTHCWSGLGEAYARSGRYISASKAFNRASVLDPNDWYTKYFIGSIQKDMGEF
ENAMETLSSVLQYRPSELCILMCLAESSLRLSKYYIHHGYYQRSALTSQKTIDICCTILN
MDNNIYSCWKMLGDACMIFSKLGKYHADFPANSVSDLLVSTESMNLANNGRQINNMIYFP
DLENKDPNYMIACGCTCFTILLSLSADDRFLLPASWYNTGVSYFTLFNCGKNKLYLEVAI
DCLKQAIKLEPKNNNFWCMLGVLLSNSSAIRAAQHCFVQALQINERDADVWVNYGALCLQ
ILDIECADTAFTRAISIDPDNSRAWLGYAYCSISVGDHGKNVQALQHAFEISGGNIRDVN
YWFASTMLALANLEQEKDVLKLWNAVYAIKRYLSEIPNDAYAKFIRSSLLEHLEEPNDSA
QTAHELCQLLEKEYDATESASALEKYVDAKGQLARLCLRLNKFEESSENASVALDLINEE
DTGAKQISLGLNLTCGLAAYFLSNLEQALQHFEKSLELGEYHPDVVILVAKVLWALGSET
GKQAAREQLLSVTEQHPEHIDSLVCLGAIGVADKDTAMMAAIQEALLNINKDKVTNPETL
AVIEKLLTILTTAYDPKELQALLLQQLFIHPNAAATWSSLIQQRYTSPSVATAFARTLYT
HPSEPADLAEAYRHQKTVSQAQVSVHLVPWEAENWNSLEQTIQSS
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacctgcgctaaaagctgctagagaggctttgagcacaaaagattatgaagaa
actataactcagtgtgaaaaagctctctcttttgactctgaaaattataacgcttatgtg
tttctaggtgttgctaacttttctttaagtaaggaacttgaggcgaagaaggcatatcaa
aatgcaatagaattagatgataaacctctgcttgcttggcagggtttgtggaacctacag
gaaaaattcaaagacattcatgggcttcatcagtcaacagaagtgttggcttataagctc
atggaagccaatgagagtgaaaaatgtttaagttttgtgaaaaagtatttagatctcgtt
cgtgaacaaggatctaaacctgatcaaataaaagcattgtctttactgacgcctagtcaa
ggtcagttatatcaattccttgagggtcgaattgagcctgtccaaagtttgtatatgcaa
atggcagacttgcaagagtttcttgatcatgactactatcaaagggaaattaataaaaga
aaaagcagacttggcgctcgccttgatcaagtaattcgcgatgtggaaaaagaaatcatg
gataattctcctatcgaaaatatctatatggaaatcattaattggtctcaggatgatgaa
attcgtcgcttgacggaaactaagttactgtacatgtatttgaaacgactctacgcatct
gacagtcaaggaaagccaatttggcagaacaaagtttgggaacttgtgcaaggcatggtt
acattacatattccggaaccgaccgcgtggactatttatttggaatggcaggatcattca
aatatcgatcaattaaactctggtgaggtgacagagttctgtactctattttcagaaaac
cctttatcaaaagcgttggctgcaattcaaaagtctgattattggatggagacgcatccg
ccggaaggaagtgagtctgatgattccccatctaaacaaaatgagaactatgatgcaaat
caatccaaagacaatctgctttcacaagatcaagtgctgtccatattgacacaagcctat
caggaatgccctcaatccttgctaattgctgaagtgtatacccagtattgtgtttacttg
aaagagtatactgatgtagtccagcttagcttatcagcactgaacacattgaagaagaca
gaatcagacacaggccttcagtatcaagaactaccatatgttctctctttattccttgct
attggttattctcattatgaggtgcctaggtatttattgcaggctggagaactttataaa
aaggtgatagctcacgtaccggataactatagtgctcttattggtttagccggtgtgcaa
atggaaaatgagcagtacggggatgccgctcaaacgttaaagagtgtgcttagggaaaat
cctgaagatccttgtttatctcagctttcgtggtgttactatatgttgggagatctcgat
aaagccatggagcaggttcaattttgcttacggattttgcaaggaaaatcaaaaaataag
ccggctttggcagaagcttactatcgttttggtatttatatgacgaagagcaaaattgaa
aattacgaagaggaatctttttcagcctttgtttcctctttgcgctgcgagccaaacttt
gcttccacttacaccgaattaggacattactataaaaatgtacatgatacttctcgtgct
atgaaatgttaccagaaggcttttgaattagaagcgtcacagacagatgctgctgaagaa
ttagctaaaatgtttgctgaagccgaagaatgggagctggtggaggtaatttccaaacgt
gtgttaagtactagtcaaaacgacttaaagcgcaaaagaaagttcaattggcatcataaa
tctttgggtgtctttcaattacattccaaaaattttcaaaccgctattgtccattttcaa
gcagccttacgtattttccccaaagatacgcattgttggagtggtctaggggaagcttat
gctcggtccggtcgttacatatctgcttctaaagcattcaacagagccagtgtattagat
ccaaatgattggtacacgaaatactttattggttctattcaaaaagatatgggagagttc
gagaatgcaatggaaacgctgtcatcagtattacagtaccgtccgtccgagttatgtata
ctgatgtgtttagcggaaagtagcctacgactttcaaagtactatattcatcacggttat
taccaaagatctgcattgacttcacaaaagacaattgatatctgctgcacgattttgaat
atggataataatatatattcatgttggaaaatgctcggggatgcgtgcatgatattttcg
aaattaggaaagtatcatgctgacttccctgcgaacagtgtttctgatttgttagtatcc
acggaatcaatgaaccttgcaaacaatggtcgacagattaacaacatgatctattttcca
gatttagagaacaaggatcctaattatatgattgcctgtggatgtacctgctttactatt
ttattgtccctttcagccgatgatagatttttgttaccagcatcgtggtacaatacaggt
gtttcatattttactttgtttaattgcggtaaaaacaagctatatttggaagtcgctatt
gattgtcttaagcaagctattaaactagagccaaaaaataataacttctggtgtatgctt
ggtgtcttattgtccaacagttctgctattcgagctgcgcaacactgctttgttcaagcc
ttgcaaataaacgaaagagatgctgatgtttgggtaaattatggagctctttgtttacaa
attttggatattgaatgcgcagatactgcattcacgcgcgctatttccatagaccctgat
aattcgcgtgcatggctgggatatgcgtattgttcaatctctgtaggagaccatggaaag
aatgttcaagctctacagcatgcttttgaaatctcaggcggaaatatacgagatgttaat
tactggtttgcaagcactatgcttgctttggcaaacttggagcaagaaaaagacgttctt
aagttatggaatgctgtgtatgccatcaaacgctatctttctgaaatccctaacgacgcc
tatgccaaattcataagaagtagccttttggaacatttggaagaaccgaatgacagtgct
caaactgcgcatgagctttgccaattgctggagaaagagtatgatgctaccgagtctgct
agtgcacttgaaaaatacgttgatgccaagggacagttggcaagattatgtttacgactg
aacaagtttgaggagtcttccgagaatgcttctgttgctttggacttgatcaatgaagaa
gacactggtgctaagcaaatctctttgggcttgaatcttacgtgtggattggcggcgtac
ttcctaagtaatttggaacaggctctacaacattttgagaaatctctcgagttgggagaa
tatcacccggatgttgtaatacttgtcgcaaaggtactgtgggcgttgggaagtgaaacc
ggtaagcaggcagcaagagagcagctactttcagtgactgaacaacatcctgaacatatc
gactcccttgtgtgcctgggtgccattggtgttgctgacaaggacactgctatgatggcg
gcaatccaagaggcccttttaaatataaacaaggacaaggtcacaaacccagaaacacta
gctgtgatagagaagttactaacgattctaacaacggcatatgacccgaaagaattacaa
gctttacttctgcagcaactatttatacatcccaatgcagccgccacttggtcttcactc
atacagcaaagatacacttcgccctcagtagctacagcttttgctcgcactctatataca
catccttctgaacctgctgatttagcagaagcatatcgacatcagaaaacggtgagtcaa
gcccaggtgtccgttcatttagttccatgggaggcagaaaactggaattcgttggaacaa
acaattcagtcttcatga
DBGET
integrated database retrieval system
