Shewanella oneidensis: SO_3088
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Entry
SO_3088 CDS
T00099
Symbol
fadJ
Name
(GenBank) anaerobic fatty oxidation complex alpha subunit FadJ
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
son
Shewanella oneidensis
Pathway
son00071
Fatty acid degradation
son00280
Valine, leucine and isoleucine degradation
son00310
Lysine degradation
son00362
Benzoate degradation
son00380
Tryptophan metabolism
son00410
beta-Alanine metabolism
son00640
Propanoate metabolism
son00650
Butanoate metabolism
son00907
Pinene, camphor and geraniol degradation
son00930
Caprolactam degradation
son01100
Metabolic pathways
son01110
Biosynthesis of secondary metabolites
son01120
Microbial metabolism in diverse environments
son01200
Carbon metabolism
son01212
Fatty acid metabolism
Module
son_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SO_3088 (fadJ)
00650 Butanoate metabolism
SO_3088 (fadJ)
09103 Lipid metabolism
00071 Fatty acid degradation
SO_3088 (fadJ)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SO_3088 (fadJ)
00310 Lysine degradation
SO_3088 (fadJ)
00380 Tryptophan metabolism
SO_3088 (fadJ)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SO_3088 (fadJ)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SO_3088 (fadJ)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SO_3088 (fadJ)
00930 Caprolactam degradation
SO_3088 (fadJ)
Enzymes [BR:
son01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SO_3088 (fadJ)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SO_3088 (fadJ)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SO_3088 (fadJ)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
LEM
LSDAT_euk
Motif
Other DBs
NCBI-ProteinID:
AAN56095
UniProt:
Q8ECP7
LinkDB
All DBs
Position
complement(3210696..3212813)
Genome browser
AA seq
705 aa
AA seq
DB search
MGKTFNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKK
DSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALA
CHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKM
GLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVNQLLEGTGFGRNIIFDQAAKQVAKK
TQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALRSIFFATTEMKKET
GAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINEKGLSNALSYAYKLLDK
GVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLALKHQMVKDIERECGEHT
IFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAHAKTSPETIATTVAFAR
KQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFPVGPITLLDE
VGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKNGKGFYQYGAASKKKAVDETV
YGVLGIKPGVDKEMSAVAERCVVQMLNEAVRCLDAGIIASPRDGDIGAIFGIGFPPFLGG
PFHYIDTLGADNLVKILERYQTQYGDRFEPCQRLKAMAAEKARFF
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgggaaaaacatttaatttaactcgccgtgaagacggtatcgccattttaaccatggac
gtacctggcgaaaccatgaataccctcaaggcggagtttggccctgagatcagtgagatc
ctgtctgagattaaacgcgattcgagtatccgtggcctagtgctgatttcgggcaaaaaa
gattcatttgttgccggtgccgatatctctatgctcgatgcttgccaaacggcgggcgat
gccaaagcgttatcccagcaagggcatgtggtgtttaacgagttggaagcattaaacatc
cctgtggtcgctgcaattcatggtgcttgcttgggcggcggtttagagctagcgcttgcc
tgccatcaacgtgtgtgcagtgatgatggcaagaccatgctgggcgtacctgaagtgcag
ctcggtttattacccggtggcggtggtacccagcgtttgccacgcttggtggggattacc
actgcgctggatatgatgttgacgggtaaacaaattcgcccgaaacaagcgttaaagatg
ggcttagttaacgatgtggtgccacaaacgattttgctgcaaaccgcagtggagatggcg
ctcgcgggtaaacaaatagctaagccagttaaaaaatcgctagtaaaccaattgcttgaa
ggtactggctttggtcgcaacattattttcgatcaagcggctaagcaagttgctaagaaa
acccaaggtaactacccagcgccagcaaagattattgattgtgtgcgccaaggtattgcc
aaaggtatgcagaagggactggaagtcgaagccagccattttgctgagctggtggtgtcg
aaagaatctgaagcgctgcgcagtattttctttgcaactacagagatgaagaaagaaacc
ggcgccgaaggtgcaacgccacgtaaagtcaaaaaagccgtgatcttaggtggcggtttg
atgggaggtggtattgcctctgtcactacgactaaggctaaaattcctgcgcgagtaaaa
gacattaacgaaaagggcttaagcaacgcgctttcttacgcctataagttattggataaa
ggcgtgaaacgtcgtcatatgacgccagccgctcgcgacaatttaatggcgctgatgaca
acgacgaccgaatataaaggtgttaaggatgccgatattgttgttgaagcggtatttgag
gatttagcgcttaaacatcaaatggttaaagatattgagcgtgaatgcggtgagcacacg
atttttgcgtctaacacctcatcgttacccattggtcaaattgcacaagcggcaagccgt
cctgaaaatgtgattggcttacattacttctcaccggtagaaaaaatgccgctggtggaa
gtgattgcccacgctaaaacctcaccagaaaccattgccaccacagtcgcctttgcccgt
aaacagggtaaaacgccaattgtggtacaagacggtgcggggttttatgttaaccgcatc
ctcgcgctttatatgaacgaagccgcacaattgctgctagaagggcaaagtgttgaacat
ctcgataaagcgttagtgaagtttggtttccccgttggcccaattaccttactcgatgaa
gtcggtattgatgtgggcgctaagatctctccaattcttgaaaaagagcttggtgaacgc
tttaaagcaccagcagccttcgacaagctattaagcgacgatagaaaaggtcgtaaaaat
ggcaaaggtttctatcagtatggcgctgccagcaagaaaaaagctgtggatgaaaccgtg
tatggcgtattaggtatcaagcctggtgtcgataaagaaatgagcgcggtagcggaacgc
tgtgtagtgcaaatgctgaatgaagcagtgcgctgcttagatgcaggcattattgcctcg
ccgcgcgatggtgatattggcgctatctttggcatcggcttcccaccattcttgggtgga
ccattccattatatcgatactttaggcgcggataacttagtcaaaatacttgaacgttat
caaacacaatatggcgatcgatttgagccttgccaacggcttaaggctatggcggcagaa
aaagctcgcttcttctaa
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