Schaalia odontolytica: FBF35_08150
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Entry
FBF35_08150 CDS
T05977
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
soo
Schaalia odontolytica
Pathway
soo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FBF35_08150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soo03400
]
FBF35_08150 (mfd)
Enzymes [BR:
soo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FBF35_08150 (mfd)
DNA repair and recombination proteins [BR:
soo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FBF35_08150 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCT35984
LinkDB
All DBs
Position
complement(1822881..1826465)
Genome browser
AA seq
1194 aa
AA seq
DB search
MLLTGLLPDITTDPAIETAIDSVEAGRSGTIVAPVGIRPPLLAAVASRAATPLVVLTATG
RDAESLTNALASWIPGVAMLPAWETLPHERLSPQVDTMARRIAVLRRLVHPITGDDSAGP
VSVLVVPIRAFLQPIISGLADLEPVRVRSGDILDLTETMNRLAELGYERVDMVEGRGQMS
VRGGILDVFPPQEPHPLRVELWGDEVDDIRAFSVSDQRTLGEAADGLWAVPCRELLLTQA
VRARAREAADRLPGAAEMLSLAAEGIAAPGIESLAPILVGGMESLLDLLPAGSPILASDP
ERIRARAADLVATTEEFLAAAWSAAAGGADTPLEASKASFLDLADLWGSGKRPWWELTDL
PPADLASAIDEAEADSPSADGPAPVVVSPTLMRVGARDVHPYRGDFARAAADLTDLARDG
WRIVVTTEGPGPGRRIRSILTDASCPAALADNVEARPDPGLVTITTAQAGVGFVAPHLKI
AILTEGDLTGRAGASTRDMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIG
RGDAASTRDYLVIEYAPSKRGQPADRLFVPTDALDQISKYTGSDEPSLTKMGGADWAKTK
ARAKKAVNEVAKELIRLYAVRQQTKGHAFGPDTPWQRELEDAFPYVETPDQLVTIDEVKA
DMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFAERYA
GFPVRIGTLSRFSTPKETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRF
GVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYT
DAQVSAAIRRELLRDGQVFYVHNRVDSISSVAAHITELVPEARVRTAHGKMNEHQLEAVI
QDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAYAYF
FYPGDKALTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVEGVGFDL
YVRMVSDAVAAYRGDAPTEKTDVRMDLQVDAHIPDGYVRGERLRLEVYAKIAAISTPEQE
ADVREELVDRYGPIPPQVDLLFAVARLREIVRRAGITEIVTQGKYLRVSPVELRDSQVMR
LKRLHPGTVIKAAVRQVLVPLPLTSRVGGSPLTDGPLLEWVETLVTKILVPFGE
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgctactcaccggactcctcccggacatcaccaccgatcccgcgatcgagacggccatc
gactccgtcgaagccggccgttccggcacgatcgtcgcgcccgtcggcatccggccgcct
ctccttgcggccgtcgcctcgcgcgcggccacgcccctcgtcgtcctcacggccaccggg
cgcgacgccgaatcgctgaccaacgccctggcctcgtggatcccgggcgtcgccatgctg
cccgcgtgggagaccctgccccacgagcgcctctcgccccaggtcgatacgatggcgcgt
cgcatcgccgtcctgcgccgcctcgtccacccgatcacgggagacgacagtgcgggcccg
gtttcggtcctcgtcgtccccatccgcgccttcctccagccgatcatctccggcctggcg
gacctcgaacccgtgcgtgtgcgcagcggcgacattctcgacctcaccgagaccatgaac
cgcctggctgagctgggctacgagcgcgtcgacatggtcgaaggccgcggccagatgagc
gtgcgcggcggcatcctcgacgtcttcccgccccaggaaccccaccccctgcgcgtggag
ctgtggggcgacgaggtcgacgacatccgcgccttctccgtctccgatcagcgaaccctc
ggcgaggccgccgacggcctgtgggccgtcccctgccgagaactcctcctcactcaggcc
gtgcgtgcgcgcgcccgcgaggccgccgaccgcctgcccggcgccgccgagatgctcagc
ctcgccgccgagggaatcgccgcccccggcattgaatccctggctccgatcctcgtgggc
ggcatggagtccctcctcgacctgctgcccgcgggatcgccgatcctcgcctccgacccc
gaacgcatccgcgcccgcgccgccgacctcgtcgccacgaccgaggagttcctcgccgcc
gcgtggagcgccgccgccgggggagcagacaccccgctcgaggcgtccaaggcctcgttc
ctcgacctggccgacctgtgggggagcgggaagcgcccctggtgggagctcaccgacctg
ccgcccgccgacctcgcctccgcgatcgacgaggccgaggccgactcgccctcagcggac
ggccccgcgcccgtcgttgtctcgcccaccctcatgcgcgtgggcgcccgagacgtgcac
ccctaccgcggagacttcgcccgagccgccgccgacctcaccgacctggcccgcgacggc
tggcgcatcgtcgtcaccaccgaaggccccggcccgggtcgacgcatccgctccatcctc
accgacgcctcgtgcccggccgcgctcgcggacaacgtggaagcgcgccccgatcccggc
ctcgtgactattacgacggcgcaggccggcgtcggtttcgtcgcgccccacctgaagatc
gcgatccttaccgaaggcgacctcaccgggcgagcgggcgcgtccacgcgcgacatgcgg
cgtatgccttcgcgcaggcgcaagggcgtcgacccgctgaccctgcaccccggggactac
atcgtccacgaccagcacggtatcggacgcttcatcgagctcgtctcccgcacgatcggg
cgtggggatgccgcctcgacgcgcgactacctggtcatcgaatacgcgccctccaagcgc
ggccagcccgccgaccggctcttcgtgcccaccgacgcgctggaccaaatctcgaagtac
accggatccgacgagccctccctgaccaagatgggcggcgccgactgggccaagaccaag
gcccgcgccaagaaggccgtcaacgaggtcgccaaggaactcatccgcctgtacgccgtg
cgccagcagaccaagggccacgctttcggccccgacacgccctggcagcgcgaactcgaa
gacgccttcccctacgtcgagacccccgaccagctcgtcaccatcgacgaggtcaaggcc
gacatggaaaagcctgtccccatggaccgcctgctcaccggcgacgtcggctacggcaag
accgagatcgccgtgcgcgccgccttcaaggccatccaggacggctatcaggccgccgtc
ctcgtgcccacgaccctgctggtcacccagcacgcggagaccttcgccgaacgctacgcc
ggcttccccgtgcgcatcggcacgctctcgcgcttctcgaccccgaaggaaaccgaggag
gtcaaggcggggctggcctcgggcgaggtcgacctggtgatcggcacccactcgctgctg
accggcaccgtttcgttcaagaagctcggcctggtcatcatcgacgaggagcagcgcttc
ggcgtcgagcacaaggagacgctcaaggccctgcgcaccgacgtcgacgtcctgtcgatg
tccgccaccccgatcccgcgcaccctcgagatggcgatctccggcatccgagagatgtcg
atcctccagaccccgcccgaggaacgccagccggtcctgactttcgtcggcgcctacacg
gacgcccaggttagcgccgcgatccgacgcgagctcctgcgcgacggccaggtcttctac
gtgcacaatcgcgtcgactcgatctcctcggtcgccgcccacatcaccgagctggttccc
gaggcacgcgtgcgcaccgcccacggaaagatgaacgagcaccagctcgaggccgtcatt
caggacttctggaaccacgagttcgacgtcctcgtgtgtacgaccatcgtcgaaaccggc
ctggacatttccaacgcgaatacgctcatcgtggaccgcgccgacaccttcggcctgtcc
cagctccaccagctgcgcggtcgtgtcggacgaggccgcgaacgcgcctacgcgtacttc
ttctaccccggcgacaaggcgctcaccgagaccgcgcacgagcgcctcaagacgatcgcc
gcgaacaccgagctgggggccggcctggccgtcgctcagcgcgaccttgagatccgaggc
gccggcaacctcctgggtggggcgcagtccggccacgtggagggcgtcggattcgacctc
tacgtgcgcatggtctccgacgctgtcgccgcctaccgaggcgacgctcccaccgaaaag
accgacgtgcgcatggacctgcaggtcgacgcgcacattcccgacggctacgtgcgcggc
gaacgcctgcgcctcgaggtctacgccaagatcgcggcaatctccacgcccgaacaggaa
gcggacgtgcgcgaggaactcgtcgaccgatacggtcccatcccgccccaggtcgacctg
ctcttcgccgtcgcgcggctgcgcgagatcgtgcgacgcgcggggattaccgagatcgtc
acgcagggcaagtacctgcgcgtctcgcccgtcgaactgcgcgattcccaggtcatgcgt
ctcaagcgcctgcaccccggaacggtcatcaaagccgccgttcgccaggttctcgtgccg
ctaccgcttacctcgcgagtcggcggttcgccgctcaccgacggcccgctcctggagtgg
gtggagactctggtgaccaagattcttgtgccttttggcgagtag
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