Solanum tuberosum (potato): 102578397
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Entry
102578397 CDS
T02981
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102578397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
102578397
Enzymes [BR:
sot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102578397
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102578397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
102578397
NCBI-ProteinID:
XP_006344526
LinkDB
All DBs
Position
Un
AA seq
1172 aa
AA seq
DB search
MATSAVDGGGNNSVGGEDIKFSVMVSLFQWIQKSKSSAKKRSKFRKFIDTFCRKPQDNFA
AIRLILPGLDRERGSYGLKEHVLATCLIDALAMSRESDDARRLLNWRKGGPKTGSNAGNF
SLVAAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRKTNAQEMKWII
MIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR
PQLALRVSNASAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMS
DVITQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILY
VGDTSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNAHRLSGEPCWSIIARSVDDVD
KFFKGTVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPDYVRPGSDLDVLIIGGYYGSGRH
GGEVAQFLVGLAEPPAPNTYPRRFISFCRVGTGISDEERNIIVTRLKPYFRKYEYPKQAP
PTFYQVTNNTKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDKVRYDKP
WHECLDVQSFVDLVHSTNGTTQREDNYGIEQDHESKTIRSSRKREKKNVSAVPSHFVQTD
VSRIKGETSMFSDMVFYFANVPSSHTLESLHKMVVEHGGSFSMNLNKSVTHCIAAESRGI
KFQAAKLHGDVIQCSWLFVCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFYSDI
SIEEIKLLLRNIEHLEDSKTVEYYKKKYCPKDKWARFHGCCIYFFIPKQCLEYSDCKVLV
ELAMRRMKVEISVGGGKVCDNLFHATHVVVMSLPEFDVKFNEVLNSFSEAEKHVLYNTKL
HVVGARWLEDSFKEDQKLVEESYSLKPSNFQMSISEKSRHDKLKGDSGKCNRPSSPDKHG
GQIKAEGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINIPRRVKRKVTSSRAKIHE
NESDESATSGEHLRNDESEAAVGSHESIAIRISGIQNEDDVQDLELSPDGKAFPPGTAEC
SVIGERLDEAYETSYGSGNIARGKDKVDELEDPVDPVQAMLLHMIPHLDSKPTRSVDTLV
KDDKPEADTNPSPKKKKKVSYKDVAGELLKDW
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagacggtggtggtaataatagtgttggcggagaagacataaaa
tttagtgtaatggtcagccttttccagtggatacagaagagtaaatcatcagcgaagaag
cggtccaagttccggaagtttattgacaccttctgcaggaagcctcaggacaatttcgct
gccattcgccttattctccctggcctcgaccgtgagcgtggctcttatggccttaaggag
cacgtcctcgctacttgcctcattgacgcacttgccatgtcccgcgaatccgatgatgcc
cgccgtcttctcaactggcggaaaggcggtcccaaaactggctcaaatgccggcaacttc
tctcttgttgccgcggaggtcctccagcgtagacagggaatggcttctgctgggctaaca
attaaggaactaaatgacttccttgatcacttggcctcaagtgaaaatagagcagagaag
acttcaattctgtctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattata
atgataattctcaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattc
catccagatgcagaggacttattcaatgtcacatgcgatttaaaattagtttgtgaaaag
ttgagggacagaagtcaacggcataaacgccaggacattgaagttggaaaacctgtccgc
cctcagctggctcttagggtcagcaatgcatctgctgcatggaaaaagctttacgggaaa
gaagtagttgttgagtgtaaatttgatggggatcgcatccagattcacaaaaataattct
gagctaaacttcttttcaagaaactttctggatcatcaagagtatgctcatgggatgtca
gatgttattactcagaatatccttgctgacaagtgcatactcgatggtgaaatgttggtt
tgggatgcatcaataaaccgctttgcagagtttggttccaatcaagaaatagcaaaggca
gcaagagagggtcttgatagtgataggcagttgtgttatgttgcgttcgatattctttat
gttggggataccagtgttattcatcggagcttaaaggaacgtcaagagattctccagaaa
gttgtgaagcccataaaaggccgtttagaaattttggtccctaatggtggtctgaatgct
catcgtctttctggggagccatgttggtcgatcattgctcgtagtgttgacgatgttgat
aaattctttaaaggaactgttgagaacagagatgaaggaatagttttgaaagatttaact
tcaaaatgggaaccaagtgatcggagtggaaaatggctaaagttgaagcctgattatgtt
cgacctggctctgatttggatgttcttattatcggaggctactatggttctgggcgacat
ggaggagaggtagctcaatttctggtgggtcttgctgagcctccggctccaaatacatat
cccagaaggttcatttctttttgcagagtgggcactggaatttctgatgaggaacgcaat
atcatagtaactcgattaaagccttatttcaggaagtatgagtacccgaagcaggcacca
ccaaccttttatcaagtaacaaataatacaaaagagcgtcccgacgtgtgggttgaaagt
ccagagaaatccatcattgtttcaattacaagtgatattagaacaataagaactgaggtg
tttgctgctccatacagtttgagatttccgcgtattgataaagtcagatatgacaagcct
tggcatgagtgtcttgatgtgcaatcatttgttgatctggtacattcaaccaatggtacc
acgcagagggaggacaattatgggattgagcaggatcatgaatcaaaaaccattaggtcg
tcaagaaaacgagagaagaagaatgtctctgcagttccttctcattttgttcagactgac
gtgtctcgaatcaagggtgaaacatcaatgttctctgacatggtgttttattttgctaat
gtgccttcatcacatacacttgaatccttgcacaaaatggtggtcgagcatgggggttct
ttctccatgaatttgaataagtcagttactcattgtatagcagctgaaagtagaggtatc
aagtttcaagctgcaaaacttcatggagatgttattcagtgctcttggctctttgtctgc
tgtctgcaaaagaagctccttcctttacagccaaagtattttcttttcctttctgattca
acaaagaaaaagatggaagcagaagtggatgaatattctgattctttctactccgacatc
agcattgaagaaattaaactgcttttgagaaatatagaacacttagaagactccaaaact
gttgagtactacaagaaaaagtactgtcccaaggataaatgggctcgatttcatggttgc
tgcatttattttttcattccaaagcagtgtctggaatattcagattgcaaggttttagtg
gaacttgctatgagaaggatgaaagttgaaatttctgtgggtggtgggaaagtttgtgac
aatctttttcatgctacccatgtcgtcgtcatgtctctaccagagtttgatgtaaagttc
aatgaagtgttgaatagtttctcagaggcagagaaacatgttttgtacaatacaaagctg
catgtagttggagcacggtggttggaggattcctttaaagaggaccagaagttggttgag
gagagttatagccttaagcctagcaattttcaaatgtcaatctctgagaagagtagacat
gataagctaaaaggtgattccggaaagtgcaacagaccatcttcccctgataaacatgga
gggcaaatcaaagcagaaggaatttcagaccagggccgagctatcacgctaccaaagagg
ggaaggaaacgagatagaggaagacctactggtagtgctacagcaaaagggaaagtgggg
atcaacattccacgtagagttaaacgcaaggtcacaagtagtcgtgctaagattcatgaa
aatgaatctgatgaaagtgctacttcaggcgagcatcttcgtaatgacgagagtgaagcg
gctgttgggagccatgaaagtattgcaatacgtatctcaggaattcagaatgaggatgat
gtacaagatctggaattgtcaccagatggtaaagcatttccaccagggactgctgaatgc
agtgtgatcggtgaaagattggacgaagcttacgaaacttcatacggaagtggaaatatt
gccaggggcaaagacaaggtggatgagctggaagaccctgttgatccagtccaagctatg
ctactgcatatgataccccacttggatagtaagccaacaagaagcgtggacactcttgta
aaagatgacaagccagaggcagatactaatcccagtcctaaaaagaaaaagaaagttagc
tataaagatgtagctggtgaattgctcaaagattggtga
DBGET
integrated database retrieval system
