Solanum tuberosum (potato): 102600584
Help
Entry
102600584 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102600584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102600584
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102600584
Spliceosome [BR:
sot03041
]
Complex A
U2 snRNP components
U2 related factors
102600584
Complex B
102600584
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102600584
NCBI-ProteinID:
XP_006349887
UniProt:
M0ZZY5
LinkDB
All DBs
Position
Un
AA seq
1115 aa
AA seq
DB search
MEELKHKSKREDESKKRHRDKEDRDREKKDRDHHHRDKKDREREKSSRYEREKSADRDRA
KHKDRHSRGDKEREKSSKVRDDDERPRDKVKEREKDKEDREEREREKEREREKERERERK
RDRERREREKEKERNREKDRHREVYEKGSDDEVDAKDRERKRRKRDNDDHHKERDRERSS
RPNNRLREESTDEVSAEKDQKSREEDLAEEQRKLDDEMEKRRRRVQEWQELKRKKEESER
ETLGVDAGAEEPKLGKTWTLDGESDDEDAEGKTGMDIDMDDSGKVMDDEIGADKVVSSSI
GSDSPVIQNGGDGLVDDDEIDPLDAFMNDMVLPEVEKLNKSVVNSLDGENSSLKEKNGLR
KEEKPKMSMKKTMGRIIPGEDSDSDYGNVENDEDPLEEEDDEEFMKRVKKTKAEKLSLVD
HSKIEYPPFRKNFYIEVKEISRISAEEVSTYRKQLELKIHGKDVPKPIKTWHQTGLSSKM
LDTIKKLNYEKPMSIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSG
DGPIGLIMAPTRELVQQIHSDIKKFARVMGLTCVPVYGGSGVAQQISELKRGAEIVVCTP
GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATF
PRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKIL
IFVHTQEKCDALFRDMIKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGL
DVKELELVINYDVPNHYEDYVHRVGRTGRAGKKGCAITFISEDDARYAPDLLKALQLSEQ
VVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEED
KSDSEDEDEGIRKAGGDLSQQAALAQAAALVAASKASMASAAAPVSAGQLLPNGGLPVAL
PGVLGINIPGATAVAAGNGLSIGSNDVTARATALAAALNLQHNLAKIQADAMPEHYEAEL
EINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYVPPGKVPGFGERKLYLFIEGPTEQ
SVKRAKAELKRVLEDITMQASSLPGSAQPGRYSVV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttgaagcacaagtcgaagagagaggacgagtcgaagaagcgccaccgtgat
aaggaggatcgagatcgtgaaaagaaggacagagaccatcaccatcgtgataagaaggat
cgagagagagagaaaagcagtcgctatgaaagggagaaaagtgctgatagagatagggca
aagcacaaggataggcacagtagaggagataaggagcgtgaaaagagcagcaaggttcgt
gatgatgatgaaagacctagagataaagttaaagagcgagaaaaggataaggaagatcgt
gaagaaagagagagggagaaagagagggaaagggagaaggagagggaacgtgagaggaaa
agagatagagagaggagagaaagggagaaggagaaggagaggaatcgcgaaaaggataga
caccgggaagtatatgaaaaggggagtgatgatgaagttgatgcgaaggatcgtgaaagg
aagaggcgaaagagggataatgatgatcatcataaggagagggatcgtgaaaggagtagc
agaccaaacaacaggctaagggaagagagcactgatgaagtatcagctgaaaaggatcag
aagagtcgagaagaggatctagctgaggagcaaaggaaattagatgacgagatggagaag
cgaaggaggagagttcaggaatggcaagagctaaaaagaaaaaaagaggagtctgagagg
gagacacttggggttgatgcaggtgctgaagaacctaagctgggcaagacttggacattg
gatggtgagtctgatgatgaagatgctgaggggaaaactggcatggatattgatatggat
gatagtggcaaggtcatggacgacgaaattggagctgacaaggtggttagttctagcatt
ggatctgattcccctgttattcagaatggcggtgatggtttagttgacgatgatgagatt
gacccgttggatgcttttatgaacgatatggttttgcctgaagttgagaagcttaacaaa
tccgtagtcaacagtttggatggtgaaaattccagtttgaaagagaaaaacggtctgagg
aaggaagaaaagcctaagatgagcatgaagaaaaccatgggaagaattatccctggtgaa
gattcggattcagattatgggaacgttgagaatgatgaagatcctttggaggaagaagat
gatgaagaatttatgaaacgggtgaagaaaaccaaggctgagaaactatcattagtggat
cattcgaagattgaatatcctcctttcagaaagaacttctacatagaagttaaggagatt
tcaagaatcagtgctgaagaggtttctacttacaggaaacaactggaattgaagatccat
ggcaaggatgttccgaaaccaatcaaaacatggcatcagactggactgtcctccaagatg
ctagacactattaagaagctgaattatgagaagcccatgtctattcaagctcaggctctg
ccagtaattatgagtggccgagattgtattgggattgctaagacaggttctggtaaaact
ctggcatttgtattaccaatgctgagacatattaaggaccagcctcctctgatgtctgga
gatggtcctattgggctaataatggcccctactagagagcttgtacagcaaattcatagt
gatattaagaagtttgcgagagtgatgggtctcacctgtgtacctgtgtatggaggttct
ggtgttgctcaacaaattagtgaattgaaacgaggagccgaaattgttgtgtgcactcca
ggtcggatgattgatatactctgtacaagtggtgggaagattacaaatctgcgaagagtc
acgtatttggtcatggatgaagctgatcggatgtttgatatgggatttgaacctcagatc
acaagaattgtccaaaacactcggccagaccgtcaaacagtcctgttctctgcaactttt
cctcgtcaggttgaaatactagctcgtaaagtgttgaacaagcctgttgaaatacaggta
ggtggtaggagtgttgtgaacaaggatataacacaattggttgaggtgaggccagaaagt
gatagattccttcggcttcttgagttacttggtgaatggtatgaaaaaggtaaaattttg
atatttgttcacacacaggagaaatgtgatgctttatttagagatatgatcaagcatggt
tatccctgtctctcccttcatggggcaaaagatcagactgatcgtgagtccaccatatcc
gactttaaaagtaatgtatgtaatttgttgattgctaccagtatagcagccaggggctta
gatgtcaaggagcttgaactggtaatcaattatgatgttccgaaccattatgaggactat
gttcatcgtgttgggcggactggtcgagctggtaagaaaggttgtgccatcacattcata
tccgaagatgatgcaagatatgcacctgatcttctaaaagctttacaattgtcggagcaa
gttgttccagatgacctgaaagctcttgctgatggtttcatggcaaaggttaatcaggga
cttgagcaagcacatgggactggttatggtggtagtggttttaaatttaatgaagaagag
gatgaagtgagaagagcagccaaaaaagcacaggcaaaggaatatggatttgaggaagat
aaatcagattcagaggatgaagatgaaggaattagaaaagcaggtggtgacctctctcag
caggctgcccttgctcaggctgctgctcttgttgctgcttccaaagcgagtatggcttca
gcagcagctccagtttcagctggtcagcttcttcccaatggtggattacctgttgcattg
cctggtgtacttggtattaatataccaggtgcaacagcagttgctgctggaaatggacta
tcaattggctctaatgatgtgacagccagagcaacagcattggcagctgccttgaacttg
cagcataacttggcaaagattcaggccgatgcaatgcctgaacattatgaagcagaatta
gagataaatgattttcctcaaaatgctcgttggaaggttacacacaaggagacgttgggt
cctatttctgaatggacaggagctgccatcaccactcgaggacagtatgttccacctggc
aaggtaccagggtttggggaaaggaagctgtacttgttcattgaaggccctacggagcaa
tctgtcaagagagcaaaagcagaattaaaacgtgtattggaggacattaccatgcaagca
tcatcacttcctggttcggcgcaaccgggcagatactcagttgtataa
DBGET
integrated database retrieval system
