Streptomyces olivoreticuli: QZH56_21855
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Entry
QZH56_21855 CDS
T09517
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sov
Streptomyces olivoreticuli
Pathway
sov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QZH56_21855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sov03400
]
QZH56_21855 (mfd)
Enzymes [BR:
sov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QZH56_21855 (mfd)
DNA repair and recombination proteins [BR:
sov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QZH56_21855 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Nif11
Motif
Other DBs
NCBI-ProteinID:
WKK21497
LinkDB
All DBs
Position
4946255..4949785
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVNDPALAEAVKAAADGHRPHVDLVGPPAARAFAVAALAREAQRPVLAVTA
TGREAEDLAAALRSLLPPDGVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
AAGPVSVVVAPVRSVLQPQVKGLGDLVPVSLRTGRSADLGEVTEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEAAEHGLWAPPCRELL
LTEGVRERAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWGIADVRDRARELGMM
WWSVSPFAADEEGDGDTLKLGMHAPESYRGDTARALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDADIDALAPSVVHVSCGSLDNGFVDPGLKIAVLTETDLSGQKSVS
KDLGRMPVRRRKTIDPLTLQAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFSPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVVKALSRFQTDTEAKA
VLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIQTAHGQMGESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRASLEGGV
EEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIRAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVSDITLQGTNVRFGPVELRESQELRLKRLYPRTVMKPATH
QILVPRPATRPIGGKPLVGRELLAWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcacggtctgctcgacgccgtcgtcaatgatccggcgctcgccgaagcggtg
aaggccgccgccgacggtcaccggccgcatgtcgacctggtcggtccgcccgccgcgcgt
gccttcgccgtcgccgccctcgcgcgcgaggcgcagcggcccgtgctcgcggtgaccgcg
accgggcgggaggcggaggatctggcggcggccctgcggtcgctgctgccgccggacggc
gtcgcggagtatccggcctgggagacgctgccgcacgagcggctgtcgccgcgttcggac
acggtgggccggcggctcgccgtgctgcgccggctggcgcacccgagtgcggacgacccg
gcggcgggtccggtgagcgtggtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aaggggctcggtgacctggtgcccgtgagtctgcgcaccgggcggagcgccgacctcggc
gaggtcaccgaggcgctggccgccgccgcgtacgcccgggtcgaactggtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctggatgtcttcccgcccacggaggagcacccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgcggac
cagcggtccctggaggccgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctgaccgagggcgttcgcgagcgggccgccgcgctcgcggaggagcaccctgagctgggc
gagcttctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gtcctggtggacgacatggagctgctgctggacgtcctcccggcgggcagcatggcggtc
gtctgcgacccggagcgggtgcggacccgggccgccgatctcgtggccaccagccaggag
ttcctgcaggcgtcctgggcggcgacggcgggcggcggcgaggcgccgatcgacgtggac
gcggcgtcgctgtggggcatcgcggacgtccgcgaccgggcgcgcgagctgggcatgatg
tggtggtcggtcagccccttcgccgccgacgaggagggtgacggcgacaccctcaagctg
ggcatgcacgcccccgagagctaccgcggcgacaccgcccgcgccctggcggacaccaag
ggctggctggccgacggctggcgcaccgtcttcgtcaccgagggccacggccccgcggcc
cgtacggtcgaggtgctcggcggcgaggggatcgcggcccggctggacgccgacatcgac
gctctcgcgccgtccgtcgtgcacgtctcgtgcggcagcctcgacaatggcttcgtcgac
cccggcctgaagatcgccgtgctgacggagacggacctctccggccagaagtcggtgagc
aaggacctgggccggatgccggtccgccgccgcaagaccatcgacccgctgacgctccag
gccggtgactacatcgtccatgagcagcacggcgtcggccgctacgtcgagatggtgcag
cgcacggtccagggcgccacccgggaatacctgctggtggagtacgcgcccgccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcaggtcacgaagtac
gtcggcggggaggcgcccacgctgcaccgcctgggcggagcggactggacgaagacgaag
gcgcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtattcggcg
cggatggccgcgcccggccacaccttctccccggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctcacgaccatcgccgaggtcaaggag
gacatggagaagtccgtccccatggaccgcctggtgtgcggcgacgtcggttacggcaag
acggagatcgcggtccgcgcggccttcaaggcggtgcaggacggcaagcaggtggcggtg
ctggtgcccaccacgctgctggtgcagcagcacttcgggacgttctccgagcgctactcc
cagttcccggtcgtggtgaaggcgctgtcgcgcttccagacggacaccgaggcgaaggcg
gtgctggaggggctgcgggacggctcggtcgacatcgtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgtgccaatgtcgacgtgctgacgatg
tccgcgacgccgatcccgcgcacgctggagatggccgtcaccggcatccgcgagatgtcg
acgatcacgaccccgccggaggagcggcacccggtgctgaccttcgtcggtccgtacgac
cagaagcagatcggcgcggccatccggcgcgagctgctgcgcgagggccaggtcttctac
atccacaaccgtgtggagtccatcgaccgggcggccgcgcggctgcgggagatcgtgccg
gaggcgcggatccagacggcgcacgggcagatgggggagagcgcgctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtggagtcgggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcg
cagctgcaccagctgcgcggccgggtgggccgcagccgcgagcgcggttacgcctatttc
ctgtatccgccggagaagccgctcaccgagaccgcgcacgagcggctggccacgatcgcc
cagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaatctgctcggcggggagcagtcgggtcacatcgcgggtgtcggtttcgacctg
tacatccggatggtcggtgaggcggtggccgactaccgcgcttcgctggagggcggcgtg
gaggaggaggcgccgctggaggtgaagatcgagctgccggtggacgcgcacgtcccgcac
gactacgcgccgggcgagcggctgcgcctccaggcgtaccgggcgatcgcctcggcgaac
accgaggaggacatccgcgcggtccgcgaggagctcaccgaccgctacggcaagctgccg
gagccggtggagaatctgctgctggtcgcgggcctgcggatgctggcgcgcgcgtgcggg
gtctcggacatcaccctccagggcacgaacgtacggttcggcccggtggagctgcgggag
tcgcaggagctgcggctgaagcggctgtatccgcgtacggtcatgaagcccgcgacgcac
cagatcctggtgccgcgcccggcgacccgtcccatcggggggaagccgctggtgggccgg
gagctgctggcgtggacgggcgagttcctgacgacgatcctggggtcgtga
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