Streptomyces olivoreticuli: QZH56_31470
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Entry
QZH56_31470 CDS
T09517
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sov
Streptomyces olivoreticuli
Pathway
sov03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QZH56_31470 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sov03400
]
QZH56_31470 (ligD)
Enzymes [BR:
sov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QZH56_31470 (ligD)
DNA repair and recombination proteins [BR:
sov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QZH56_31470 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DUF5949
Motif
Other DBs
NCBI-ProteinID:
WKK23210
LinkDB
All DBs
Position
6998017..6998919
Genome browser
AA seq
300 aa
AA seq
DB search
MPAPSERQAVEIGGHRLSLTHLDRVLFPASGHTKAQVLHYYARIATVLVPHTTGRPASFV
RAPEGPEGQSWVAKNPPGGAPGWVPLVPVEHREGVTEQVVVDSTAVLIAMANLGAYEIHV
PQWKAAAGPDAHDRLVLDLDPGPGADLVVCCRVAQRLRQLLDDDGLTAHAVVSGSKGLHL
YAPLHPAPGRAVSAYAKELAARMMGEHPGLVVVSMARLERRGKVLIDWSQNASAKTTAAP
YTVRLRERPGVAAPVTWDEVAACRDPDELAFTPERVLDRVDGYGDLLAPLTGDATRAALP
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaccttcggagaggcaggcggtggagatcgggggacaccggctctccctcacc
cacctcgaccgcgtcctcttccccgcctccggacacaccaaggcccaggtgctgcactac
tacgcccggatcgccaccgtgctggtgccccacaccaccggccgccccgcctccttcgtc
cgcgcgcccgaggggccggaaggccagtcctgggtcgccaagaacccgccaggaggagcg
cccggctgggtgcccctggtcccggtggaacaccgcgaaggcgtcaccgagcaggtcgtc
gtcgactccaccgccgtcctgatcgccatggcgaacctcggggcgtacgagatccacgtc
ccccagtggaaggcggccgccgggcccgacgcacacgaccgcctcgtcctcgacctcgac
cccgggccgggcgccgacctggtcgtctgctgccgcgtcgcccagcggctgcgccagctc
ctcgacgacgacgggctcacggcccacgccgtcgtctccggctcgaagggcctgcacctc
tacgccccgctgcaccccgcgcccggacgtgccgtctccgcctacgccaaggagctcgcc
gcccggatgatgggcgaacaccccggtcttgtggtggtctccatggcccgcctggagcgc
cggggcaaggtgctcatcgactggtcgcagaacgcgagcgccaagaccaccgccgccccc
tacaccgtgcggctgcgcgagcggcccggtgtcgccgccccggtcacctgggacgaggtc
gcggcctgccgcgatccggacgagctcgccttcacccccgagcgggtcctcgaccgcgtc
gacggctacggggacctgctggccccgctcaccggcgacgccacgcgcgccgcgctgccc
tga
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