Spathaspora passalidarum: SPAPADRAFT_151563
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Entry
SPAPADRAFT_151563 CDS
T03101
Name
(RefSeq) dsDNA break repair ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPAPADRAFT_151563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spaa03400
]
SPAPADRAFT_151563
Enzymes [BR:
spaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPAPADRAFT_151563
DNA repair and recombination proteins [BR:
spaa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SPAPADRAFT_151563
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
mRNA_cap_enzyme
RTT107_BRCT_5
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
18870899
NCBI-ProteinID:
XP_007374961
JGI:
151563
UniProt:
G3AMK2
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MPFFLDNVPTPKNNLEPSYRFLNDELFIKLDAVNKQTLGEFKNISDKKAYIINSFIQQFK
LHIGNDIYPSARLIFPDKAGRLYYIKDIVLARLIIKMYSIPKDSDDYSMLYNWKLQYQKT
KRFTVDQHKLRDLPLQAARIISNRRNYMNETHEFSVADINAKLDALNLAKKSAEQIEILK
PLFDTLTIPELRWLIHIILKKTILGFFENYFLNSWHPDASRLYSICNNLQKTVNYLVDPN
TRVDPNLLTVHPFYPFKPQLAQKLSSSYAKLIKDFQKITDMEPQMQTLFDKLDLKDKFYI
EEKMDGDRMVLHKEGPHFKFYSRRLKDYSFLYGENYEFGSLTKYLTEAFPGNVDSVILDG
EMVAYDYVRKAILPFGTLKSSAIQESVRQYTIIDQYEQQSSYPYFLVFDILYLNGRNLTN
YPLFFRKNILNKVIRPIPNRFEIHDSRISSSIEDIKRAIREIVGSRSEGLVLKHTQSKYH
IGYRNLKWIKLKPEYLEKFGENLDLVVIGKVPGVKNSYMTGLRNETDGSYYSFCMCANGF
TNEEFDKIERITHGKWIKTKDQIPSKSVIQFGTKQPPWWINPRDSLVLEIKARSIDAQSE
KTFAVGSTLHNMYCRRIRTDKNIDECISMQEYFQLKEKFSTDVLKSQSAALKRKQLHNLD
LFNESTIKKQRVESNLFARFNFMIVSDKLDPITGERTSREELMKLVKKYGGNLINAVDVL
TADRMLVITEKMLPLCESFINRGIDLIKPNWIFECINRGTILQLEPFFIFSTSNWDKYTV
GKVDQFGDSYIIYNSITELSIPRLSDSELRGARKLHMHEWGDQRPKLYLFLDTNFFVVGD
TMSAKFLGQRIMRYTGEITKDINGCSYIVVPIYDDEKNRIETLDAVNKISSKISEGLLFD
EGSFTRIPFIVTEKFIDQCIKENCIVDPEDYKYYQKQISFSKKSFAIN
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgccattctttctagacaatgtacccacacccaagaacaatctcgaaccatcataccgg
tttctcaatgatgaattgtttatcaagctagatgccgtaaacaaacaaacacttggtgag
ttcaaaaacatatctgataagaaagcgtatattattaactctttcatccagcagttcaaa
ctacacattgggaatgacatataccccagtgcgagattaatatttcccgacaaggcagga
agattatactatattaaagatatagtattagcgcgattaattattaaaatgtacagcatt
cctaaggattcagacgattacagcatgttatacaattggaagctacaataccaaaagaca
aaaaggtttaccgttgaccaacataaacttcgcgatttaccattgcaagcggcaagaatt
atttccaacaggaggaattacatgaatgaaactcatgaattcagtgttgccgatatcaac
gcaaaacttgacgcgttaaatttggccaagaagtcagccgaacaaattgagatattgaag
ccattatttgatacattgaccattcccgaattacgctggttgattcatattattcttaaa
aagaccatacttggattttttgaaaattatttcttaaatagctggcatcctgatgcaagc
cgattatattctatttgtaataatttgcaaaaaacagtaaattacttggttgatccgaat
acaagagtagatcccaatttattaactgtccatccattctatccattcaagccacagttg
gcgcaaaagttgagtagttcatatgccaaattaatcaaagacttccagaaaataaccgat
atggaaccacagatgcaaacattattcgataaattagatctaaaagataaattttacatt
gaggaaaaaatggatggcgatagaatggtattgcataaagaaggaccccatttcaaattt
tattcccgtcgattaaaagattattcattcttgtatggagaaaactatgaatttggttca
ttgacaaagtatctaactgaagcatttcctggtaatgtagactcggtgattttagatgga
gaaatggtggcttatgattatgttaggaaagcaattcttccatttggtacattaaaatct
ctggctattcaagaaagtgtgcgacagtacaccattattgatcaatatgaacaacaatct
tcatacccttacttcctcgtgtttgatatactttacttgaatggacgcaatctaaccaac
tatcccttgttctttaggaagaacatcttgaataaggttatccgacctattcctaatcgg
tttgaaatccacgattcaagaattagttccagtatagaagacataaaacgagcaattcga
gaaattgtcggcagtagaagtgaggggttggtattgaaacatacacagctgaagtatcat
attgggtaccgtaatctcaaatggataaaattgaaaccagaatatttagagaaattcgga
gagaatctagatcttgttgtcattggcaaagtgcctggggtcaagaattcatacatgacc
ggactccggaatgaaactgatggatcatattatagtttctgcatgtgtgccaatggtttt
accaatgaagaattcgacaagattgaacgtataactcatggaaaatggatcaagactaaa
gatcaaataccttctaaactggttatacagtttggaaccaaacaaccaccttggtggatc
aatcctcgagattcactagtattggaaattaaagcaagatccattgatgcccaaagtgaa
aagacattcgcggtgggatcaactttgcacaacatgtattgtagaagaataagaactgac
aagaatatagatgaatgtatctcaatgcaggaatacttccagttgaaggaaaagtttctg
actgatgtattaaaatctcaaagtgctgcattgaaacggaagcagttgcataacttggat
ttatttaacgaatcaactatcaaaaagcaaagagtagaatcaaatttgtttgctaggttt
aatttcatgattgtcagtgataagttggatcctataactggtgaacgaacttcgcgagag
gagttgatgaagttggttaagaagtatgggggtaatttgatcaatgcagttgatgtgttg
actgcagataggatgctcgttatcactgagaagatgcttccactttgtgaatcatttatc
aatcgaggaatcgatttaataaaaccaaattggatattcgagtgtattaatcggggaact
atactacagttagagccattctttatattcagtacttctaactgggataagtataccgtt
gggaaagtagatcaatttggcgattcgtatattatatataatctgatcactgaattatct
atccctaggttgagtgacagtgaattaagaggagcaagaaaattacacatgcatgaatgg
ggagatcaaagacccaaattgtacttgtttcttgataccaacttctttgttgtaggtgat
accatgagtgcaaagttcttggggcagcgaattatgaggtatacaggagaaatcaccaag
gacatcaacggttgttcctatattgttgtgccaatatatgacgatgagaagaatagaata
gagactttggatgctgtcaataaaatctcttctaaaatcagtgaaggtttactatttgat
gaagggtcattcacgaggatcccattcattgtaactgaaaagtttattgatcagtgtata
aaagagaattgtattgttgatcctgaagattataagtactaccaaaagcagatttctttt
ctgaagaaaagttttgcaatcaattaa
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