Sporosarcina pasteurii: E2C16_10145
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Entry
E2C16_10145 CDS
T06007
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spae
Sporosarcina pasteurii
Brite
KEGG Orthology (KO) [BR:
spae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E2C16_10145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spae03400
]
E2C16_10145
Enzymes [BR:
spae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E2C16_10145
DNA repair and recombination proteins [BR:
spae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E2C16_10145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
RFX5_N
DUF2173
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QBQ06005
LinkDB
All DBs
Position
complement(2079279..2081129)
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AA seq
616 aa
AA seq
DB search
MKPMRLTDANKVPQGKEWIYETKYDGFRCLLIWDGETPTLKSRNNKELTHLFPEIIQFCT
TIYKRIQPYLPLTLDGELVYLRNDFQSEFPIVQTRGRMRSETNIAEHAKQFPCHYICFDL
LSVKNEDLTNMPLTDRKKELLKLFTAAGISTAVQYKSKTRLQAIESFTDNELLWHKMIVH
NGEGMIAKKKASTWVEDTRSKQWVKVKNWRYVHVMLTKYDKKNGFFTGAVYKEDALKEVV
TFLHGLDADEVQTLQNLFLSNGQQTSRNIWQLPPSICVQIACIGFDGKHLREPRFHKFDL
EMNAHKCDWNQMLRQLLPIPKSIAITHPDKPVWPEMDIQKESYLYYLQNVASLMLPFLRN
RHLTVIRFPHGVPGEMFYQKNAPDYTPDFISTSRVDDINYILCNDIEALLWLGNQLALEF
HIPFQTIETKKPTEIVFDLDPPSVEEFSLAVEAAIRMKLIFDKFELESFVKTSGGKGLQV
YIPLPFNRYTYEDTRLFTKFVCDFLCEQEPNWFTTERLKKNRNNKLYLDYVQHQEGKTII
APYSPRGNERGLVATPLLWNEVNSSLKPDQFPIPAVLERIKRQSDPFGDFFDAGEKQNFE
SVYRQLKEMLTCTAIR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgcgattaacggatgcaaataaggtacctcaagggaaagaatggatatat
gaaacgaagtatgatggatttcgatgtctattgatatgggatggagaaacacctacatta
aaaagtcgcaacaataaggaactgacgcacttgtttccagaaatcattcaattttgcaca
actatttataaacggattcagccctatttaccattaacattggacggagaacttgtttat
ttacggaatgattttcaaagtgaatttccaattgttcagacacgagggcggatgcggagt
gaaacaaatattgcagaacatgctaaacaatttccttgtcattatatttgcttcgattta
ttgtcagtaaaaaatgaagatcttaccaacatgcctttaacagatagaaaaaaggagtta
ctgaaactatttacagccgcaggaatttcaacagcggttcagtacaaaagtaaaactcgc
ctccaagcaattgagtcttttacagataacgaattattgtggcataaaatgattgtacat
aatggtgaaggcatgattgcaaaaaagaaagcgagtacctgggtggaagatacgcggtca
aagcagtgggtaaaagttaaaaattggcgttacgttcatgtgatgttaacgaaatatgat
aagaaaaatggctttttcacgggtgcagtgtacaaagaagatgcactaaaagaagttgtc
acatttcttcacggacttgatgcagatgaagttcagacattacaaaatttatttctatca
aatggccagcaaacatcacgtaatatctggcaattaccgccttccatttgcgtccaaatt
gcttgtattggctttgatgggaaacatttacgtgaacctagatttcataagtttgattta
gaaatgaatgcccataagtgtgactggaatcaaatgcttcgacagttgctaccgattcca
aaatccatagcaattacacatcctgataagccagtttggcctgaaatggacattcaaaaa
gagagttacttgtattacttacaaaacgttgcatctctcatgttgccatttttgcgtaat
cgccacttgacggtcattcgctttcctcacggtgtgccaggtgaaatgttttatcaaaaa
aacgcaccggattatacacctgattttatctcaacctcaagggtcgatgatatcaattat
attttgtgtaatgacattgaagcattgttatggcttggtaatcaacttgccctcgaattt
catatcccttttcaaacgatagaaacgaaaaagccgactgaaattgtttttgatttagat
ccaccttcagtggaagagttctctttagcagtcgaagcagcgatacggatgaaattgatt
ttcgacaaatttgaacttgaatccttcgtgaaaacatccgggggaaagggattacaagtt
tatatccccttaccttttaatcgatatacctacgaggatacccgtctatttacaaagttc
gtttgtgattttttgtgcgagcaagaacctaattggtttacgacagaacgtttgaagaaa
aaccgtaacaataaattatatttagattatgtacaacatcaagaagggaaaacgatcatt
gcgccttattcaccgagggggaatgaacgaggactagtcgctacgcctttattatggaat
gaagtaaattcatcattaaagcctgatcaatttccgattccggccgttttagagcgtata
aaacggcaaagtgatccatttggggacttttttgatgcaggggaaaagcaaaattttgaa
agtgtttatcgtcaattgaaagaaatgttaacttgcacagcaattagatga
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