Sphingomonas panacis: AWL63_16920
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Entry
AWL63_16920 CDS
T04760
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
span
Sphingomonas panacis
Pathway
span03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWL63_16920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
span03400
]
AWL63_16920
Enzymes [BR:
span01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWL63_16920
DNA repair and recombination proteins [BR:
span03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWL63_16920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOH85374
UniProt:
A0A1B3ZD67
LinkDB
All DBs
Position
3770918..3774370
Genome browser
AA seq
1150 aa
AA seq
DB search
MPNLKTILAAKTPLTLAGVPAGFAPWLLADLARAAPSRAVFVASDEAAMRAVAATAPVFA
PDLEILMFPAWDCLPYDRASPTLRVMAERMATLHRLQQPTKAPQLLITTANALAQRTLTP
FRIRQLVAKLAPGERIGRDRLAAQLQANGYVRVETVADSGEFAVRGGLVDLFPSGAEAAL
RLDFFGDEIESVRTFDPADQRTTGRIDGFTLLPASETLLDEDSIKRFRSRYRERFGATAT
GDPLYQAISDGRRLAGMEHWLPLFEDKLVTLFDHLGGDAVIVRDSGVQAAAEQRFEAIND
YHANRVKALTNEPGSYRPLPPSALYLTAKEFAEALQTAPAHLVTPFHEPESATVLDFQVD
GPRDFAPERAGGVNVYEAVVEHIAKLRRQGRKPVLASYSGGSRERLATLLADHGLKASTK
VATWQEALGKADSGVSLIILPLDHGFTTPDVALLTEQDMLGDRLVRRAKRKKSADAFLAE
LAMLTPGDLVVHVDHGIGRYEGLTSIPVGKSPHDCVALSYAGGDKLFVPVENIDVLSRYG
SDSEGASLDRLGGEAWQRRKSRMKERIREIAGELIATAAERALHPADVIEADSGYAEFVD
RFPYEETDDQERAIGEVLEDLAKGTPMDRLVVGDVGFGKTEVALRGAFAAAMAGKQVAIV
CPTTLLARQHFNNFASRFEGFPIKVGRLSRLVTAAEMKATKEGLADGTIDVVVGTHAILA
KGIEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFFVTPRIADLPEIEDFLREGVPE
IRYVVAHGQMAPSQVEERMSAFYDKKFEVLVSTTIVESGLDIPSANTMILHRADRFGLAQ
LYQLRGRVGRSKTRAYAYLTTPPDRIMTETAEKRLKVLSDLDSLGAGFQLASHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAIMEAKAGGERMRPKNFSPQITVDAPILIPEDYV
PDLDLRMGLYRRLNDLEDTGEVEAFAAELIDRFGPLPDPTENLIRIIEIKLHAKKACVAK
IDVGPRGALVAFHDDKPPNIDGLLAWLKRVGDVAKLRPDSKLVVTRVWADPKARLHGALQ
LAKGLAKAAG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacctgaagaccatcctcgccgccaagaccccgctcaccctcgccggcgtaccc
gccggtttcgcgccgtggctgctcgccgatctcgcgcgcgcggcaccgtcgcgcgcggtg
ttcgtcgcgtcggacgaagcggcgatgcgtgcggtcgcggcgaccgcgccggtgttcgcg
cccgatctcgaaatcctgatgttcccggcgtgggattgcctgccctatgatcgcgcctcg
ccgacgctgcgcgtgatggccgagcggatggcgacgcttcaccggctccagcagccgacc
aaggcgccgcaactgctcatcaccaccgcaaacgcgctggcgcagcgcacgctgacgccg
ttccgcatccgccagctcgtcgccaagctcgcgccgggcgagcggatcgggcgtgaccgc
cttgcagcgcagcttcaggccaacggctatgtccgcgtcgagaccgtcgccgattcgggc
gaattcgcggtgcgcggtggcctggtcgatctgttcccgagcggcgccgaggcggcactt
cggctcgacttcttcggcgacgagatcgagtcagtccgcaccttcgaccccgccgaccag
cgcaccaccggccggatcgacggcttcaccctccttcccgcctcggaaaccttgctcgac
gaggatagcatcaagcgcttccgcagccggtaccgcgagcgcttcggcgcgaccgcgacc
ggcgatccgctctatcaggcgatcagcgacgggcggcggctcgcgggcatggagcattgg
ctgccgctgttcgaagacaagttggtcactttgttcgaccatcttggcggcgacgcggtg
atcgtgcgcgattccggcgtgcaggcggcggccgagcagcgtttcgaggcgatcaacgat
tatcacgccaaccgcgtcaaggcgctgaccaacgagcccggcagctatcgcccgctgccg
ccgagcgccttgtacctcaccgccaaggagttcgccgaggcgctgcaaaccgcccccgcg
cacctcgtcacgccgttccacgaacccgagagtgcgacggtgctcgacttccaggtcgat
ggcccacgcgatttcgcgcccgagcgcgccggcggcgtcaacgtgtacgaagcggtcgtc
gaacatatcgccaagctgcgccggcaggggcgcaagccggtgctggccagctattcgggc
ggctcgcgcgagcggctggcgacgttgctcgccgatcatggcctcaaggcatcgaccaag
gtcgcgacctggcaggaggcgcttggcaaagccgatagcggcgtatcgctcatcatcctg
ccgctcgatcacggcttcaccacgcccgatgtcgcgctgctcaccgaacaggacatgctc
ggcgaccggttggtgcggcgcgccaagcgcaagaaatccgccgacgcgttcctcgccgaa
ctggcgatgctcacgccgggcgaccttgtcgtccatgtcgatcacggcatcggccgctac
gagggactgacctcgattccggtcggcaagagcccgcacgattgcgtagcgctctcctat
gcgggcggcgacaagctgttcgtgccggtcgagaatatcgacgtgctctcgcgctacggc
tcggacagcgagggcgcgagcctcgaccggctcggcggcgaggcgtggcagcggcgcaag
agccgcatgaaggagcggattcgcgagattgccggcgagctgatcgcaaccgccgccgag
cgtgcgcttcatcctgccgacgtgatcgaggccgacagcggctatgccgagttcgtcgat
cgcttcccctatgaggaaaccgacgatcaggagcgcgcgatcggcgaggtgctggaggat
ctcgccaagggcacgccgatggaccggctcgtcgttggcgatgtcggctttggcaagacc
gaggtcgcgctacgcggtgcgttcgcggcggcgatggcgggcaagcaggtcgcgatcgta
tgcccgacgaccttgctcgcgcgccagcatttcaacaatttcgcgagccggttcgagggg
tttccgatcaaggtcgggcggctctcgcgcctcgtcaccgccgccgagatgaaggcgacc
aaggagggcctcgccgacgggacgatcgacgtggttgtcggcacgcacgcgattctcgcc
aagggcatcgagttcaaacggctcggcctcgtcatcgtcgatgaggagcagcggttcggc
gtgactcacaaggagcgactcaagtcgctcaagaccgacgtccacgtcctcacactcacc
gccacgccgatcccgcgcacgctccagatggcgatgtcgggcttgcgcgaactgtcggtg
atccagaccccgccggtcgatcggctcgcggtgcggacctatgtcatgccgtgggacccc
gtcgtgctgcgcgaggcgttgctgcgcgaacattatcgcggcgggcagagcttcttcgtc
acgccgcgcatcgccgatctgcccgagatcgaggacttcctgcgcgaaggcgtgcccgag
attcgctatgtggtcgcgcacggccagatggcgccgagccaggtcgaggagcgcatgtcg
gcgttctacgacaagaagttcgaggtgctcgtctcgaccacgatcgtcgaaagcgggctc
gacatcccgagcgccaacacgatgatcctccaccgcgccgaccggttcgggctcgcgcag
ctttatcagcttcgcggacgtgtcggccgctccaagacgcgcgcctatgcgtatctcacc
accccgcccgatcgcatcatgaccgaaaccgcggagaagcgtttgaaggtgctgtccgat
ctcgacagcctcggcgctggcttccagctcgccagccatgatctcgacatccgcggcgcg
ggcaatctgctcggcgacgagcaatcggggcatatcaaggaggtcggctacgaactctac
cagtcgatgctcgaagaggcgatcatggaggcgaaggcgggcggtgagcgcatgcgcccg
aagaatttctcgccgcagatcaccgtcgatgcaccgatcctcatccccgaggattacgtg
ccggacctcgaccttcgcatggggctgtaccgccgcctcaacgatttggaagataccggc
gaggtcgaggcgttcgccgccgaactgatcgaccggttcggccccctgcccgatccgacc
gagaacctcatccgcatcatcgagatcaagctgcacgccaagaaggcctgcgtcgccaag
atcgacgtcggcccgcgcggcgcgctggtggcgttccacgatgacaagccgccgaatatc
gatgggctgctggcgtggctcaaacgcgtcggcgatgtggcgaaactgcgccccgacagc
aagctggtggtgacgcgcgtctgggccgaccccaaggcgcggctccacggcgcgctgcaa
ctggcgaaggggctggcgaaagcggcggggtga
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