KEGG   Saccharomyces paradoxus: SPAR_D00780
Entry
SPAR_D00780       CDS       T08193                                 
Name
(RefSeq) Cdc9
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
spao  Saccharomyces paradoxus
Pathway
spao03030  DNA replication
spao03410  Base excision repair
spao03420  Nucleotide excision repair
spao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPAR_D00780
   03410 Base excision repair
    SPAR_D00780
   03420 Nucleotide excision repair
    SPAR_D00780
   03430 Mismatch repair
    SPAR_D00780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spao03032]
    SPAR_D00780
   03400 DNA repair and recombination proteins [BR:spao03400]
    SPAR_D00780
Enzymes [BR:spao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SPAR_D00780
    6.5.1.6  DNA ligase (ATP or NAD+)
     SPAR_D00780
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SPAR_D00780
DNA replication proteins [BR:spao03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SPAR_D00780
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SPAR_D00780
DNA repair and recombination proteins [BR:spao03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SPAR_D00780
   NER (nucleotide excision repair)
    Other NER factors
     SPAR_D00780
   MMR (mismatch excision repair)
    Other MMR factors
     SPAR_D00780
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Phasin
Other DBs
NCBI-GeneID: 54629325
NCBI-ProteinID: XP_033765111
UniProt: A0A8B8UN79
LinkDB
Position
IV:complement(166192..168459)
AA seq 755 aa
MRRLLAGFIPSSARPLNSRLPLLMSSSLPSSAGKKPKQATLARFFTSMKNKPSAGTSSSK
KSSKHMLEDRIDDVSGEEEYATKKLKQIAVAHTPVAPSSMDSNSSSLPSSAPSSGVVDSP
QQSQGLGCEVEDSLGSNDNDHYSSNIPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMK
QSSKNLIPTTYLFINRLGPDYEAGLELGLGENLLMKTISETCGKSMSQIKLKYKEIGDLG
EIAMGARNVQPTMFKPKPLTVGEVFKNLRTIAKTQGKDSQLRKMKLIKRMLTACQGVEAK
FLIRSLESKLRIGLAEKTVLISLSKALLLHDENRENSPDKDIPMDILESAQQKIRDAFCQ
VPNYEIVINSCLEHGIMNLDKYCTLKPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKY
DGERAQVHLLNDGSMRIYSRNGENMTERYPEINITDFIQDLDSTKNLILDCEAVAWDKDQ
GKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCHNDERLINKSLKERREYLTKVTKVV
PGEFQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKD
YLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLL
HERLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDKGVSL
RFPRFLRIREDKGVEDATSSDQIVELYENQSHMQN
NT seq 2268 nt   +upstreamnt  +downstreamnt
atgcgaagattactggctggttttattccctcatctgctcgtcccttgaactcaagattg
ccgttattaatgtcatcctcattaccttcctcggccggcaagaagcctaaacaagctact
ttggctaggttctttacttccatgaaaaataagccatcggcaggcacttcttcttccaag
aaatcatccaaacatatgctggaagatagaatagatgatgttagtggtgaagaggaatac
gctaccaagaaactgaaacagattgctgttgcacatacgccggtggctccaagctccatg
gatagcaattcatcttctttaccatcatctgctccctcttctggtgttgttgattcaccg
caacaatctcaggggctgggatgtgaggtcgaagactcattgggctcgaatgataatgat
cattattcatctaatatcccctattctgaggtttgtgaggtttttaacaagatagaagcc
atatcttctcgtttagagattatcagaatctgctccgattttttcataaagataatgaag
cagtcgtccaagaacttaatacctacaacatatcttttcatcaatagattgggccctgat
tacgaagcaggtttggaattgggccttggagaaaatctccttatgaaaaccataagtgaa
acttgcgggaaatctatgagccaaatcaaactcaaatacaaggaaattggggatctgggt
gaaatagcaatgggcgcgagaaatgtccagcctaccatgtttaagcccaaacctttgacc
gtcggtgaagtcttcaaaaatcttagaactattgcgaagactcaaggtaaagattcgcaa
ttaagaaagatgaagctgatcaagagaatgcttactgcatgtcaaggtgtagaggctaaa
tttttgatcagatcgctagagtcaaagctgagaattggtcttgctgaaaagactgtcttg
atatccctgtcgaaggcccttttgctccatgatgagaatagggaaaactctccggacaaa
gatatccccatggatatcttagaaagcgctcaacaaaagattagagacgcattctgtcag
gtgcccaactatgagattgttataaactcatgtttggaacacggtattatgaatttggac
aaatattgcactctaaagccgggaattccgttaaagcccatgttggccaagcctactaag
gcaattaatgaagtattggatagatttcaaggcgaaacttttacgtcagaatacaagtat
gatggtgaaagggctcaagtgcatttgttaaatgacggttcaatgaggatttattccaga
aatggagaaaatatgactgagagatatccagaaatcaacataacagattttattcaagac
ttggatagtaccaaaaatttgattctagattgtgaagctgtagcttgggacaaagatcag
gggaaaattttgcctttccaagttttaagcacaagaaaacgtaaagacgtggaattgaac
gatgttaaagtaaaagtctgtctctttgcatttgatatactctgccacaacgacgaaaga
ctgataaataaatcattaaaggaaagaagagaatatttaactaaggttactaaagttgtt
ccgggggaattccaatacgccactcagataacaacgaacaatcttgatgaactccaaaaa
ttccttgatgaatcagttaatcactcatgcgaaggtttgatggtcaaaatgttggaaggt
cctgaatcacattatgaaccaagtaaaaggtcgagaaactggttgaaattaaaaaaagat
tacttggaaggagtcggagattcattagatctttgcgtattgggggcgtactacggtaga
ggaaagaggactggtacgtacggtgggttccttctgggatgttacaaccaagatacagga
gaatttgaaacttgttgcaaaatagggacaggcttttctgacgaaatgttgcagctctta
cacgaaaggttgaccccaacgataattgatggaccaaaagccacgtttgttttcgattcg
agtgctgaaccagatgtatggtttgaacctacaactttgtttgaagttttaactgcagac
ctttccctatcacctatttataaagcaggtagcgcaacttttgataaaggcgtatctttg
agatttccaagatttttgcgtataagagaagataagggagtagaagatgcaacctcttct
gatcaaattgttgaattgtacgaaaaccaatctcacatgcaaaattag

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