Saccharomyces paradoxus: SPAR_L00620
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Entry
SPAR_L00620 CDS
T08193
Name
(RefSeq) Ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
spao
Saccharomyces paradoxus
Pathway
spao03022
Basal transcription factors
spao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SPAR_L00620
09124 Replication and repair
03420 Nucleotide excision repair
SPAR_L00620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spao03021
]
SPAR_L00620
03400 DNA repair and recombination proteins [BR:
spao03400
]
SPAR_L00620
Transcription machinery [BR:
spao03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SPAR_L00620
DNA repair and recombination proteins [BR:
spao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SPAR_L00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
54632152
NCBI-ProteinID:
XP_033767783
UniProt:
A0A8B8UVN6
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All DBs
Position
XII:156070..157449
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AA seq
459 aa
AA seq
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MAPVVVSESEEDEDRVAITRRSKRQVHFDGDGDDRVDQQQQHSNHRDRDRHAQRKKKKRL
SNRNLQGSNGGYAWEDEIKRSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGI
IRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLV
SQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTT
DPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFN
EAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYGGYFCPNCHSKVCSLPTV
CPCCDLMLILSTHLARSYHHLMPLKTFAEVPTTEKFRSEDCFSCQSRFPILKNNKNGKLL
TSSRYRCEDCKQEFCVDCDLFIHEILHNCPGCESKPLIT
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgtagtagtttcagaatctgaagaggatgaggatagagttgctattacaaga
agaagtaagagacaggttcattttgatggtgatggagatgatcgtgtagaccaacagcaa
cagcattcaaaccatagagatagggataggcatgcgcagcgtaagaagaagaaaaggctc
tcgaatagaaacctacaaggttccaatggtgggtacgcttgggaagatgagatcaagaga
agttgggatttggtgaaagtggacgatgaaggggatatggcatcccttgtggctagcatt
gtagaggccagaaagaaacgtacagctaaaaagaatataacgccatatcaaagaggcatc
atcagaagtttaatattaaccctagattgcagtgaagctatgctggaaaaggatttgaga
ccaaacagacatgcaatgattattcagtatgccatagattttgtccatgaattttttgat
caaaatccaatatctcaaatgggtattatcataatgagaaacggcttggcacagctagtc
agccaagttagcggaaacccgcaggatcacattgatgcgttgaaatccatcaggaaacag
gaaccaaaggggaacccctccttgcaaaatgcattagaaatggcaagaggcctcttactg
cctgttcctgcacattgcacaagagaagtgctgattgtgtttggtagtctttccacaact
gatcctggcgatattcaccaaactattgattcgttagtttctgagaaaattagagtgaag
gttctggggttgtcagctcaagtggccatttgtaaagaattatgtaaggcaacaaactat
ggtgatgaatccttctataaaattttactcgatgaaacccacctaaaggaactattcaac
gaggctgttactcctttacccgttaacaagattaataagggtttcacacttgtaaagatg
gggttcccgacaagaatatttgaagatactccgacgttttgctcatgccattccaagtta
gtttacggcggatacttctgtcccaattgtcacagtaaggtttgttcattgcccacagtc
tgtccatgctgtgacttgatgttgatcctttcaacccacttggctagatcatatcaccat
ctaatgccattgaaaacatttgccgaagtacccacaacagaaaaatttcgatcagaagac
tgctttagttgccagtcaagatttcccatacttaaaaataataaaaatggtaaactacta
acaagttctcgctatcgttgtgaggattgtaaacaagaattttgtgttgattgcgattta
ttcatccatgaaatccttcataactgtccaggttgtgaatccaagcccctaataacttaa
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