Stenotrophomonas pavanii: STNY_R00270
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Entry
STNY_R00270 CDS
T07567
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STNY_R00270 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R00270 (ligD)
Enzymes [BR:
spaq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STNY_R00270 (ligD)
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STNY_R00270 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BCX41880
LinkDB
All DBs
Position
26947..29430
Genome browser
AA seq
827 aa
AA seq
DB search
MSLHQYRRKRRLGGGAGQTPEPDDIPAHGDPKRRPTFVIQLHHASSRHYDFRLEMEGVLK
SWAIPKGPSLRAGEKRLAVQVEDHPLSYATFEGDIPEGHYGAGHVDVFDQGTWACEGDPL
EALAAGKIDFVLHGQRLAGAWKLVRTAMKGRQVQWLLIKRDDDAARDAEADDLLEVPASK
ARPSKKRAATKAVRAAPAARARSRRASARWRTRALGLEGARDTAYPRDFKPQLTDHRDSA
PDGERWLHEIKWDGYRLLADLHEGQVKLRSRNGLDWTADFPEVAQAVQALPVDDARLDGE
LVVLDKQGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGTDISRAPLLERKALLKDLIGP
APGILAFSEHVIDHGPQVFDASGKAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTEEFVI
VGHTAPKGSRVGFGSLLLAAPDKGGLRYVGRVGTGFDDDSLRALAQALQPLAVTAPVLQL
PAHVPFRAASVRWVKPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGVDAAEADAG
SGVQITHPERVVYPRQKLRKGDVADYYRRMARWILPEIAGRPLSLLRCPDGVGKACFFQK
HHGPGLGDAVHAVPLQQKSGREDYVYVDDARGLLQLVQMNTLELHPWGATVADPEHPDRL
VFDLDPGEGVSWAQVKAAARDVRDHLQEVGLESFVRLSGGKGVHVVVPLQPKGDWEQAKA
FCEAFARAMAERAPDRYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARDSAGVAVP
LRWEELARVRAADAFPMEKALARAKRLDSDPWQGIAQVKQTLPSLKR
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcaccagtaccggcgcaagcgccggctcggcggtggcgccgggcagacgccg
gagcctgacgacatccccgcgcacggcgatccgaagcgccggccgacctttgtcatccag
ctgcatcacgccagttcgcgccactacgacttccgcctggaaatggagggcgtgctgaag
agctgggcgataccgaagggcccctcacttcgggccggcgagaagcggctggcggtgcaa
gtggaagaccatccgctgtcctacgccacgttcgagggcgatatccccgaaggccactac
ggcgcgggccatgtcgacgtattcgatcagggcacctgggcctgcgaaggggatccgctt
gaggcactcgccgcagggaagatcgacttcgtgctgcatggccagcgcctggcaggcgcc
tggaagctggtgcgcacggcgatgaaggggcgccaggtgcaatggctgctgatcaagcgc
gatgacgatgcagcacgcgatgcggaggcggacgacctgctggaggtgcccgcgtcgaaa
gcccgaccgtcgaagaagcgtgctgcgacgaaagcggttcgcgctgctccggccgcgcgc
gcccgcagccgcagggcctcagcgcgctggcgtacccgcgcgctggggctggaaggcgcg
cgcgacacggcctatccccgcgacttcaagccacagctgaccgatcaccgcgacagtgcc
ccggacggcgaacgctggctgcatgagatcaagtgggatggttatcggctgctggccgac
ctgcacgaaggacaggtgaagctccgttcgcgcaacggcctggactggacggccgacttc
cccgaagtggcgcaggcggtgcaggctctgccggtggatgatgcgcgcctggacggcgag
ctggtggtgctggacaagcaggggcgcagcgacttcgccgcgctgcagcgggtgatcgac
ggcagttcgaagcagccactgcgctatatcgtgttcgacctgcccggcgtggccggcacg
gacatcagtcgtgcaccgttgctggaacgcaaggcgctgctgaaggatctcatcgggccc
gcgccgggcatcctggcgttcagcgaacacgtgatcgaccatggaccgcaggtgttcgac
gccagcggcaaggccggtttcgaaggcatcgtcagcaaacaggtggatgccccgtacgtg
aacacccgtgcacgcagctgggtgaaggtgaagcacgaggacaccgaggagttcgtgatt
gtcggccacactgcacccaagggttcacgggtgggatttggctcgcttctgctggcggcg
ccggacaagggagggctgcgttacgtgggacgggtcggcaccggtttcgacgatgacagc
cttcgcgcgctggcccaggccttgcagccattggcagtgacggcgccggtactgcagctg
ccggcacacgtcccgttccgcgcggcgagcgtgcgctgggtcaaaccggtggcggtggcc
gaggtcgccttccgtggctggggcaaggaaggcctgctgcgccaggccagcttcaagcgg
ctgcgcagcgacaagcagaaggaggacctgggcgtggacgcagcagaggccgacgccggg
tccggggtccagatcacgcatcccgagcgggtcgtgtatcccaggcagaagctgcgcaag
ggtgacgtggccgactactaccggcgcatggcacgctggatccttcctgaaatcgccggc
cggccgctgtcactgctgcgctgcccggatggcgtcggcaaggcctgcttcttccagaaa
caccatggccccgggctgggcgacgccgtgcatgcggtgcccctgcagcagaaaagcggc
cgcgaggactatgtctacgtcgacgatgcgcggggcctgctgcaactggtgcagatgaat
accctggagctgcatccgtggggcgcgaccgtggccgatcccgagcatcccgatcgcctg
gtgttcgacctcgatcccggcgaaggggtgagctgggcacaggtgaaagcggccgcgcgc
gatgtccgtgaccacctgcaggaggtcggcctggagagtttcgtgcgcctgtccggtggc
aagggcgtgcatgtggtggtgccgctgcagcccaagggcgactgggaacaggccaaggcg
ttctgcgaggcgtttgcgcgggcgatggcggagcgggcgccggaccgttacgtggcgacc
atgagcaaggcaaagcgtggtggcgtcatcttcatcgactggctgcgcaacacgcgcggc
gccaccagcgtgtgctcctggtcgctgcgtgcgcgcgacagtgccggcgtagcggtgccg
ctgcgctgggaagagctggcccgggtcagagcggccgacgcgttcccgatggaaaaggcg
ctggcccgcgccaaacggctggacagtgacccatggcagggcatcgcgcaggtgaagcag
acgctaccgtcgctgaaacggtag
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