Saprolegnia parasitica: SPRG_10651
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Entry
SPRG_10651 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPRG_10651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spar03400
]
SPRG_10651
Enzymes [BR:
spar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPRG_10651
DNA repair and recombination proteins [BR:
spar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SPRG_10651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
DNA_ligase_A_C
BRCT
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
24132751
NCBI-ProteinID:
XP_012205277
UniProt:
A0A067C487
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MAGTLPFGSFCALLERVASTTKSEAKLKLIFSTELRAACGDGSVYPLLRLLLPHLDRDRT
YKLKEKKLAALYVELLGISASSGDGKKLLHWTDPTIVTTRAVGDFSSVLEEVMQYRAKPC
DASVTIEDVNGLLDALNKVHMVDAMAEKKRVLRQMLTRFSGNEQKWLVRMILKDLKIGLR
HERVLAFIHPDAPEMFNHTNDLARVCDELTDSRVRYVPAITPGQVFTPMLAKRVPFGECT
QAMQSNAFYMEPKLDGERITCHVQRTASGGRSTQLVTRNGTNYTDKYGPAIASYIEAQVH
AAYDCILDGEMLVWDSVAFKYESFGSLKTVAIEQAQGKNPGQWLCYVVWDIVYCGGDGAM
ALIQKACPNVVASTSTNIMGLPLSARLSVLDAILTPLAHRVERIEQVLVTASMPAQARHE
RVMAEVDARLLAGYEGVILKDATSHYMCGEAGRKSQRWVKLKPDYAGMTRQLDVLVIGGY
YGSGSRRGGAVSHFLLGVLERTPKASDASVPVVSFCKVGSGYSLPELEALRERLAPHWRP
WEAGKLPEHFEGWTPKADSRPDVWLAPEDSVCVEIYGFELTYSSEYQTGLTLRFPRVKAI
RYDKNWTDALTLSQLNALKGQQFSQKRAIDVAFGHKDTTKRKATPQKSKRAALDKGHVGV
ALQYTQANLAEVEEASSLFSGSTFCVLPGKLGTMDKPGLEQLLHAHGATCVQNPHPTLHP
PATTWIVAPHADGLKTRNYMKQGVYDILHADWVLRSVEASSLVAKRATDYVFATAPTAAL
LTTQYDAYGDHYTTPLTRDDLERLLQSPAFPPPQPHAWQDAARHLNADEQAAIECPTNCL
WHCVVYVDQFSSMVTDASLPARVDRTSDMHHIAQCIALFGGQVDTVLSSRVTHVVLPDGP
STPERLALLRPWIQARRRTAGSEPVVVTSKWVVASIRAREQLPMEGHGAPVFQIPC
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggccgggacgttgccctttggaagcttctgcgcgctcctcgagcgcgtcgccagcacg
accaagagcgaggccaagctcaagctcatctttagcacggagctgcgcgcggcctgcggc
gatggctcggtgtacccgctgctgcggctgctcctgccgcacctcgaccgcgaccggacg
tacaagctcaaggagaagaagctcgccgcgttgtacgtggagctcctcggcatcagcgcc
agcagcggagacggcaagaagctcttgcattggacggacccgacgatcgtgacgacgcgg
gcggtcggcgacttttcgtccgtgctcgaggaagtcatgcaataccgggccaagccctgc
gatgcgtccgtgaccatcgaggacgtcaatggactcctcgacgcgctcaataaggtgcac
atggtcgatgcgatggccgagaagaagcgcgtgctgcggcagatgcttacacgcttctcg
ggcaacgaacagaaatggcttgtccgcatgatcctcaaagacctcaagattggactgcgc
cacgaacgcgtattggcctttattcacccggacgcgcccgaaatgttcaaccacacgaac
gacttggcccgcgtctgcgacgagctcacggactcgcgcgttcggtacgtaccggcgatt
acgcccgggcaggtctttacgccgatgctcgccaagcgcgtgccttttggcgagtgcacc
caagcaatgcagtcgaatgcgttctacatggagcccaagctcgacggcgagcggatcacg
tgccatgtacagcgcacggcgtccggcggtcgctcgacgcagctcgttacacgcaacggc
accaactacacggacaagtacggcccggccatcgcctcgtacattgaggcccaagtccat
gcagcgtacgactgcattctcgacggcgaaatgcttgtctgggacagcgtcgcgttcaag
tacgagtcgttcgggtcgctcaagacggtcgcgatcgagcaagcccaaggcaaaaaccca
gggcagtggctctgctacgtcgtgtgggacattgtctactgcggcggcgacggcgccatg
gcgctcatccaaaaagcctgccccaacgtcgtcgcgtcgacgtcgaccaacattatgggg
ttaccgctctcggcacgcctctccgtcctggatgcgatcttgacaccgctggcgcaccgc
gttgaacgcatcgagcaggtcctcgtgaccgcctcgatgccggcgcaggcccgacacgag
cgcgtcatggccgaagtcgacgcccgccttctcgctggctacgagggtgtgatcctcaag
gacgccacgtcccactacatgtgcggtgaagccggtcgaaagagccagcgctgggtcaag
ctcaagcccgattacgccggcatgacccgccaactggacgtgctcgtcattggcggctac
tacgggtcgggcagtcggcgcggcggcgccgtctcccattttctgctcggggtgctggaa
cggacgccaaaggcgtcggacgcgtcggtaccggtggtgtcgttttgtaaagtgggctcg
ggctattcgttgcccgagctggaggcgcttcgggagcgtctcgcgccgcactggcgcccc
tgggaggccggcaagctgccagaacactttgagggctggacaccaaaagccgactctcgc
ccggacgtgtggctagcccctgaagactcggtctgcgtcgagatctatgggtttgagctc
acgtactcgagcgagtaccagacgggcttgacactccgctttccgcgcgtcaaagccatt
cggtatgacaagaactggaccgacgcgctcacactctcgcagctcaacgctctcaagggc
cagcagtttagccaaaaacgcgcgatcgatgtggccttcggccacaaggacacgacgaag
cgcaaggcgacgccacaaaagtccaagcgcgcggccttggacaagggtcacgtcggcgtc
gcgctgcaatacacgcaggccaacctcgccgaggtcgaagaagcatcgtcgctcttctca
gggtctacgttttgtgtgctccccggcaagctcggcacgatggacaagccgggtctcgag
cagcttctgcacgctcatggtgccacgtgtgtgcaaaacccgcacccaacgctgcatccg
cccgcgacgacgtggattgtggcgccgcatgccgacggactgaaaacacgcaactacatg
aagcaaggtgtgtacgacattctgcacgccgactgggtcctccgcagcgtcgaagcgagc
agtttggtcgccaagcgcgcgaccgactatgtgtttgcgacggcgccaacggccgcgctc
ctcacgacccagtacgatgcctacggcgatcactacacaaccccattgacgcgcgacgac
ctcgaacgactcttgcagtcaccggcgtttccaccgccgcagccgcacgcgtggcaggac
gcggcgcgccatctcaatgcagacgagcaagcagcgatcgagtgcccgaccaactgcctc
tggcactgcgtcgtctacgtggaccagttttcatcgatggtgacggacgcgtcgttgcca
gcgcgagtggaccgtacatcggatatgcatcacatcgcgcagtgcatcgctctcttcggt
ggccaagtcgacacggtgctatcgagtcgggtcacgcatgtcgttctgccggacggaccg
tcgacaccagagcggctcgcgcttctgcgcccgtggatccaagcgagacggcgcaccgcg
ggtagcgagccggtcgtcgtcacgtccaagtgggtcgtcgccagcattcgcgctcgcgag
caattgccaatggaaggccacggagcgcccgtctttcagattccgtgctaa
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integrated database retrieval system
