KEGG   Saprolegnia parasitica: SPRG_16972
Entry
SPRG_16972        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
spar  Saprolegnia parasitica
Pathway
spar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPRG_16972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spar03021]
    SPRG_16972
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_16972
Transcription machinery [BR:spar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPRG_16972
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPRG_16972
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH zf-CCCH_2 Torus zf-CCCH_4 zf-CCCH_3 Zn_finger_prot
Other DBs
NCBI-GeneID: 24138546
NCBI-ProteinID: XP_012211824
UniProt: A0A067BL61
LinkDB
Position
Unknown
AA seq 202 aa
MPGTIWIDDEEALVFDFEAALPALLAAASTALPQDEDAKKDFKRGTVVCRHWLRGLCMKG
DNCEFLHQFDMSKMPECRWGMECQVPECPFRHVPDEDRMECAFYKQGFCSHGSACRYRHV
KLPRDECPVIADFGLQSKAAEEESAKRRKTQPVNEFFKIAICKHWEKQGTCPFGDECHFA
HGEKELRPFPKDAGKGDHHHGG
NT seq 607 nt   +upstreamnt  +downstreamnt
atgcccgggacgatctggatcgacgacgaggaagcgcttgtcttcgacttcgaggccgcg
ctgcctgcgctcctcgccgctgcttcgacggcgctgccgcaggacgaagatgcgaagaag
gactttaagcgaggtacagtcgtctgccggcattggctgcgcggcctctgcatgaagggc
gacaactgcgagtttctgcatcagttcgatatgtccaagatgcccgagtgtcgatggggc
atggagtgccaagtgcccgagtgtcccttccgccacgtgcccgacgaggaccgcatggag
tgcgcgttctacaagcaaggcttttgctcccatggcagcgcgtgccggtaccgccacgtc
aagctgccgcgcgacgagtgccccgtcatcgccgactttggcctccagagcaaggccgcc
gaagaagagagcgccaagcgccgcaagacacagcccgtgaacgagttcttcaagatcgcg
atctgcaagcactgggagaagcagggtacatgtccgtttggcgacgagtgccatttcgcc
cacggcgagaaggagctgcggccgttccccaaggatgcggggaagggcgaccaccaccat
ggcggcg

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