Sphingomonas paucimobilis: DRN02_009320
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Entry
DRN02_009320 CDS
T06034
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DRN02_009320 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spau03400
]
DRN02_009320 (ligD)
Enzymes [BR:
spau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DRN02_009320 (ligD)
DNA repair and recombination proteins [BR:
spau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DRN02_009320 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QBE92204
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All DBs
Position
1969951..1972389
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AA seq
812 aa
AA seq
DB search
MADPLERYNAKRDFTRTAEPAGTLEPGKGNSFIVQKHDATRLHWDFRLEVDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYATFEGTIPEGQYGGGTVMLWDRGTWSPVAGKSAKDLE
DGHLHFILDGERMKGEWLLVRMKPRAKEKRENWLLRKVADAQAGGTDTLTDQALTSVATG
RTMAQIAEGKPPKKTPTRKPKVAARKAKAKNGTLPEFRSPALCTLVDQVPAGNGWLHEIK
YDGYRALIAIGGGKAQVFTRSGLDWSAKFPGIVAAAADLPVTSALIDGEIVAFKNGRPDF
STLKDAIGTDRPMSLFAFDLLSLDGEDLTGLPLVQRKERLRGIIPKGDETIQFAEHITGS
GEALFDKLCAEGLEGIVSKRADSRYPNGRSRDWLKIKCLRRQEFVIVGWLPSDKARRGLK
SLLLGVNRDGKLAYAGKVGTGFTQQRMAELRALLDARTRKTTPVEAPRAMVRGAHWVRPD
LVAEIAFTETTPDGLLRHPSFIGLREDKPADQVVEERPAPVPSPEASAITITHPYRVIFP
DSDLTKGDLADYVAKLAPLMLPWVARRPVSLVRCPQGRARACFFQKHDAGSFGSQVHSIP
IREKDGGTEPYLYVEDAEGLRACIQMGSIEFHGWGSSIATLEQPDRMIFDLDPDPSVSFD
DVKRAAVHIHDQLAELGLTSFAMLSGGKGVHVVVPLTPQAEWPAVSNFAERFAKALAQGD
PARFVAVATKAKRQGRIFIDWLRNQRGATAVMPYSARARAGAPVAAPVAWRELDKVDTAA
RWTIRDAEELLERAASAGLRGWGVADQILPDV
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgctcgaacgctataacgccaagcgcgacttcacccgcaccgccgagccc
gcgggcacgctggagcccggcaagggcaacagcttcatcgtgcagaaacatgacgcgacc
cggctgcactgggacttccgactggaggtggacggggtgctcaaaagctgggccgtcacg
cgcgggccgagcctggaccccgatgagaagcggctggcggtgcggaccgaggatcatccg
ctgtcctatgcgacgttcgaagggacgattcccgagggtcaatatggcggcggcacggtg
atgctgtgggatcgcggcacctggtcgccggtcgcgggcaagagcgcgaaggatctggag
gacggccacctccacttcatcctcgatggcgagcggatgaagggcgaatggctgctcgtc
cggatgaagccacgggccaaggaaaagcgcgagaactggctgctccgcaaggtggcggat
gcacaggccgggggcaccgacacgctgaccgatcaggcgctgaccagcgtcgcgaccggc
cgaaccatggcgcagatcgccgaggggaaaccgccgaagaaaacgcccaccaggaaacca
aaggtcgccgcccgcaaggcgaaggcgaagaacggcacgctgccggagtttcgatccccg
gcgctgtgcacgctggtcgatcaggtgcccgccggaaatggctggctgcacgagatcaaa
tatgacggctatcgcgcgctgatcgcgatcggcggcggcaaggcgcaggtcttcacccgg
agcggcctcgactggagtgcgaaattccccggcatcgtcgcggccgctgcggacctgccc
gtcacgtccgcgctgatcgatggcgagatcgtcgcattcaagaatgggcggcccgatttc
tcgacgctgaaggatgcgatcggcaccgaccggccgatgagcctcttcgccttcgacctg
ctgtcgctcgacggcgaagacctgaccggcctgccgctggtccagcgcaaggagcggctg
cgcggcatcattcccaagggcgacgagacgatccagttcgccgagcatatcaccggatcg
ggcgaggcgctgttcgacaagctttgcgccgaggggctggagggcatcgtctccaagcgc
gccgacagccgctacccgaatggccggagccgcgactggctgaagatcaaatgcctgagg
cggcaggagttcgtcatcgtcggctggctcccgtccgacaaggcacggcgggggttgaag
tcgctgctgctgggggtgaaccgcgacggcaagctggcctatgccggaaaggtcggcacc
ggcttcacccagcaacgcatggccgaactccgcgcattactcgacgcccgtacgcgcaag
accacccccgtcgaagccccccgcgcgatggtgcgcggcgcgcattgggtccgccccgat
ctggtcgccgaaatcgcctttaccgagacgacgcccgatggcctgctccgccatcccagc
ttcatcggattgcgcgaggacaagcccgccgaccaggtggtcgaggaacgcccagccccc
gtcccgtcgcccgaagccagcgccattaccatcacccatccctaccgggtgatcttcccc
gacagcgatctgaccaagggcgacctcgccgattatgtcgccaagctcgcaccgctgatg
ctcccctgggtcgcgcggcggccggtcagcctggtgcgctgcccgcaaggccgtgcccgc
gcctgtttcttccagaagcatgacgcgggcagtttcgggtcgcaggtgcactccatcccg
atccgcgagaaggacggcggcaccgaaccctatctctatgtcgaggatgccgaggggctg
cgtgcctgtatccagatggggtcgatcgagtttcacggctggggctcgtccatcgcgacg
ctggaacagcccgaccggatgatcttcgacctcgaccccgatccatcggtctcgttcgac
gatgtgaagcgcgccgccgtccatatccatgaccagttggccgaactgggactgaccagc
ttcgccatgctgtcgggcggcaagggcgtccatgtcgtcgtgccgctcacgccgcaagcc
gagtggcccgccgtatcgaacttcgccgaacgcttcgccaaggcgctggcgcaaggcgat
ccggcgcgcttcgtggcggtcgcgaccaaggccaagcgacaggggcggatcttcatcgac
tggctgcgcaaccagcgcggggcgaccgccgtcatgccctattcggcgcgcgcgcgggcc
ggggcaccggtcgcggccccagtcgcatggcgcgagttagacaaggtcgacacggcggca
cgctggacgatccgggatgccgaggaattgctcgaacgggccgccagcgcaggcctgcgg
ggatggggcgtggctgatcaaatcctgcctgatgtctaa
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