Streptomyces parvulus: Spa2297_13495
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Entry
Spa2297_13495 CDS
T04685
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spav
Streptomyces parvulus
Pathway
spav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spa2297_13495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spav03400
]
Spa2297_13495
Enzymes [BR:
spav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spa2297_13495
DNA repair and recombination proteins [BR:
spav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spa2297_13495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANJ07919
UniProt:
A0A191UYV4
LinkDB
All DBs
Position
complement(2976017..2979550)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAISAAADGNRMHVDLVGPPAARPFAIAALARETSRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGESADLEATVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTPDVRERAAALAEDHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRDRARELDMM
WWSVSPFAADDALDEADTLKLGMHAPETYRGDTAKALADTKGWLADGWRAVYVTEGHGPA
ARTVEVLGGEGIAARLDNDLGTLGPSVVHVSCGSIDHGFVDRNLRLAVLTETDLTGQKAA
GREGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAK
RGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQTDTESK
ATLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACSVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKAGS
HQVLVPRPKTAKVGGKPLLGRELLGWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcgatc
tcggcggccgcagacggcaaccgcatgcacgtcgacctcgtcggcccgcccgcggcccgc
cccttcgcgatcgccgccctggcccgcgagacgtcccgccccgtcctggcggtgacggcg
acgggacgcgaggcggaggacctggccgcggccctgcgctccctgctgccccccgagggc
gtcgtggagtacccctcctgggagaccctgccgcacgagcgcctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcggcgcctggcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtcgccctgcgcaccggcgagagcgccgacctggag
gcgaccgtcgaggccctggcggccgcggcgtacgcgcgcgtggagctggttgagaagcgc
ggcgagttcgccgtccgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
ctccgggtcgagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccccggacgtgcgcgagcgcgccgccgccctcgccgaggaccaccccgagctgggc
gagctgctcggcagaatcgccgagggcatcgcggtcgagggcatggagtccctggccccc
gtcctcgtcgacgacatggagctgctcctcgacgtgctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtgcgcacccgggccgcggacctggtggcgacctcgcaggag
ttcctccaggcgtcctgggccgccaccgccggcggcggcgaggcgccgatcgacgtcgac
gcggcctccctgtggtccatcgcggacgtccgggaccgcgcccgcgagctggacatgatg
tggtggtcggtctcccccttcgccgccgacgacgccctcgacgaggccgacaccctcaag
ctcggcatgcacgcccccgagacctaccgcggcgacaccgccaaggcactggccgacacc
aagggctggctcgccgacggctggcgcgcggtctacgtcaccgagggccacggtccggcc
gcccgcaccgtcgaggtcctcggcggcgagggcatcgcggcccggctcgacaacgacctg
ggcaccctcggcccctccgtcgtgcacgtctcctgcggctcgatcgaccacggcttcgtc
gaccggaacctccggctcgccgtcctcaccgagaccgacctgaccggccagaaggcggcg
ggccgcgagggcgcccggatgcccgcccggcgccgcaagaccatcgacccgctcaccctg
gagaccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtg
cagcgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaag
cgcggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaag
tacgtcggcggcgaggcccccaccctgcaccgcctgggcggcgccgactggaccaagacc
aaggcccgcgcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctacagc
gcccggatggccgccccgggacacgccttcggcgcggacaccccctggcagcgcgagctg
gaggacgccttcccctacgcggagaccccggaccagctcaccaccatcgccgaggtcaag
gacgacatggagaagacggtccccatggaccgcctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtccgcgccgccttcaaggcggtccaggacggcaagcaggtcgcc
gtactcgtgccgacgaccctgctggtccagcagcacttcgggacgttcagcgagcgctac
gcccagttcccggtgagtgtgaaggcgctgtcccgcttccagaccgacaccgagtccaag
gccaccctggagggcctgcgcgagggctcggtggacatcgtcatcggcacccaccggctg
ttctcgtccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgacc
atgtcggccacccccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tccaccatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggcccctac
gagcagaagcagatcggcgccgccgtccgccgcgagctgctgcgcgagggccaggtcttc
tacatccacaaccgcgtcgagtccatcgaccgcgcggcggcccggctgcgcgagatcgtc
cccgaggcgcgcatcgccaccgcccacggccagatgtccgagcaggccctggagcaggtc
gtggtcgacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
agccagctgcaccagctgcgcggccgggtcggccgcggccgggagcggggctacgcgtac
ttcctctacccgccggagaagccgctgacggagaccgcgcacgagcggttggcgaccatc
gcccagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggccacatcgccggcgtcggcttcgac
ctgtacgtgcggatggtcggcgaggcggtcgccgactaccgggcctccctggagggcggg
gtcgaggaggagccgccgctggaggtcaagatcgagcttccggtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcggctccaggcgtaccggtccatcgcctccgcc
aacagcgaggaggacgtcaaggccgtacgcgaggaactcgtcgaccgctacggcaaactg
ccggagccggtggagaacctgctgctggtcgcgggcctgcgcatgctcgcgcgggcgtgc
tccgtgggcgagatcgtgctccagggcaacaacatccgcttcgcgccggtcgagttgcgc
gagtcccaggagctgaggctgaagcggctctaccccggcaccgtcatcaaggccggcagc
caccaggtcctcgtaccgcgcccgaagaccgcgaaggtcggcggcaagccgctgctcggg
cgggaactgctcggctgggtcggggagttcctgacctcgatcctgggctcgtag
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