Shewanella putrefaciens CN-32: Sputcn32_2158
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Entry
Sputcn32_2158 CDS
T00513
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sputcn32_2158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_2158
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sputcn32_2158
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sputcn32_2158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABP75879
UniProt:
A4Y7E6
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All DBs
Position
2473522..2477010
Genome browser
AA seq
1162 aa
AA seq
DB search
MTHFSALTPPVVKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELE
LTYLLGKCDIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTLMM
RLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEFPTDSAAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKETQLVTLGDIEKSARAH
LQEVETRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFISPTTESVETGKTTVI
DANQLPDISANHKLKQPLLALQDYAQNAPRMLFSAESEGRREALLELLSKIQLKPALFSH
FDEFIQSDAKLGLIVSPLSRGCLLKLSPKDAVSIICETELFGHRISQQRRREKQRQISND
ALIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSNLHL
ISRYSVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIDEE
EYAQFAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNA
GKQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVI
GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMS
GMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQG
IIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERA
DTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQ
DLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRI
PALLPEAYVSDVNIRLSLYKRIAGCETQEALDELKVELIDRFGLLPEATKNLMEMTLYKH
QATRLGATKIEVHAKGGSIEFSHDHVIDPGFIIGLLQSQPQIYRMEGPNKLKFSLTAETA
KDRLDVVKLLLEQLSQHRLGDK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcacttttcagccctaacgccaccagtcgtcaaaaatggtactcaaatgcaaacc
ctatccgcactcggtggtgtttgccaagcggtcacactcgccagcttagtgcgccaacat
ccagggacaacactgcttgtcaccagcgacacgcctagcgccttaagcttagagttagag
ctcacctatttactcggtaaatgtgatatcaaggttcggctattcccagatcgtgaaacc
ttgccctatgacagtttctcgccccatcaggatctgatctctcaacgcctagaaacgctg
tcacaaatatcccaaaccgaacacagtgtggttatcgtccccgtcaccactttgatgatg
cgcctgccacctaaagcctatttgagcgccaacgtctttgtgcttaaaaagggcgataga
tatcaattacacaatgtacgccaacatttaactgatacaggttaccacttggtggagcaa
gtgtatgaacatggcgagtttgccattcgtggttcgattttggatattttcccgacgggc
gttaatatgccgctgcgcatcgagctattcgatgatgaagttgagaccattcgccatttc
gaccctgaaacccagcgttcgttacatcctgttgagtccattcgcctattaccggcaaag
gagtttccgactgacagtgccgccattgaaggatttaggcaacgataccgccgccgtttt
gaagtgatagtcaaagagcctgaatcggtttaccaattggtaagtcgtaatctcatgccc
gcagggattgaaaattacctgccactgttttttgatgaagtcgcaaccctatttgattac
ttacccaaggagactcaacttgtcacccttggggatattgaaaaatccgcccgagcccat
ttgcaggaagtcgaaacccgctaccaagacagacgtgtcgatccactgcggccactgctc
gcgcctaaagaactgtatttactgattgaagagctatttgcagcatttaaaccactgccg
cgctatcagtttatttcgcccactaccgagtcggtagagacaggtaaaaccacagttatc
gatgctaatcaacttcccgatatcagtgcgaatcacaaattaaagcagccattactcgca
ttacaagattacgcccaaaatgcaccgcggatgctatttagcgccgagtctgaaggacgg
cgcgaagccctgcttgaactcttaagtaaaatccaacttaaacccgcattattcagccat
tttgatgaatttattcaaagtgatgccaaactggggcttatcgtttcaccactatcacgc
ggctgtttacttaagctcagtccaaaagatgccgtgagcattatttgtgagacagaactt
tttggtcaccgtatctcccagcagcggcgccgggaaaaacagcgccagatcagcaatgat
gccctgattaaaaacttagccgaactgaaagtcggccaacccatagtgcacctcgaacac
ggtgtagcgctataccaaggcttagtgaccctagacacgggcggtttagttgccgaatac
ctgcaattagaatacgcaggtggcgataaactctatgtacccgtatcgaacttacacctg
atcagccgttacagtgttggtgcagatgaagacgcccatctcaataaacttggcaacgag
acgtgggccaaagccaagaacaaagccatagagaaaatccgcgatgtggcagcagaactg
cttgatgtttacgcccgtcgccaagcgcgtcccggcgaaagttgcgagattgacgaagag
gaatatgcccaatttgcccaagggttcccctttgaagaaaccgtcgatcaagaaagtgct
attcatgccgtattagcagacatgcgttccccaattgccatggacagacttgtatgtggt
gacgtgggctttggtaaaacggaagtcgcaatgcgcgcggcctttgtggccgtcaacgca
ggtaagcaagtcgtagtgctagttcctaccaccttgcttgcccagcagcattatgaaaac
tttaaggatagattcgccgattggcccgttgtcacagaggtgatgtcgcgatttagaacg
gcaaaagaacaaacccaagtgctcaagcagctggaagaaggtaaagtcgatatcgttatc
ggcacccataagttactgcaatctgaagctaaatttgaaaatctcggcttactgatcatt
gatgaagaacacagattcggtgtacgccaaaaagaaaaaattaaggcgctgcgggccaat
gtggatattttaaccctcacagcaacccccattccgcgaaccttaaatatggccatgtcg
ggcatgcgtgatttatccattatcgccaccccacccgccaaacgcttagccgtaaaaacc
tttgttcgcgaatccgatcccgcaaccgtgcgcgaagccattctgcgggaaattctgcgt
ggtggccaagtctattatctgcacaataatgtcgaaagcattgaaaagtgtgcccaaggg
attatcgacttagtgcctgaagctcgcgttgtcgtcgcccatggtcaaatgcgtgaacgg
gatcttgagcgagtcatgtcagacttttatcatcaaagattcaacgtgttagtctgtact
actattatcgaaactgggattgacgtccccagcgcaaacaccattattattgagcgcgcc
gatacctttggtctggcacaattacaccaactgcgtggtcgtgtaggccgctcacatcat
caagcctatgcttatttgatgacaccacaccccaaacgcatgacaagtgatgcccgtaaa
cgccttgaagccattgatgcactagaagatcttggtgctggatttatgctcgcaacccaa
gatttagagatccgcggtgcgggagaactccttggggacgagcaaagcggccatatttcc
aaaataggttttagcttgtacatggaaatgcttgaagcggcagtcaaagccttaaaacaa
ggcaaagagccatcgcttgcgcaaatgctcaaccagcaatgtgaaatcgaactaaggatc
ccagcgctattgcctgaggcctatgtgagcgatgtaaatattcgcctatccttatataaa
cgcattgcaggctgcgaaacccaagaggcactcgatgaattaaaagtcgaattaattgat
cgctttggcttactgccagaggcgactaaaaacctcatggaaatgacgctctataaacat
caagcaactcgcctaggggcgactaaaattgaagtacacgccaaaggcggcagtatcgaa
tttagccatgatcatgtgatagatccgggttttattattggattactccaaagccagcca
caaatctatcgaatggaagggccgaataagttaaagttcagtcttactgctgaaacagcc
aaagatagactcgatgtagtcaaactcttgcttgaacaattatcgcaacatcgtcttgga
gataaatag
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