Streptococcus periodonticum: EHW89_05375
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Entry
EHW89_05375 CDS
T06568
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spei
Streptococcus periodonticum
Pathway
spei03410
Base excision repair
spei03430
Mismatch repair
spei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EHW89_05375 (recJ)
03430 Mismatch repair
EHW89_05375 (recJ)
03440 Homologous recombination
EHW89_05375 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spei03400
]
EHW89_05375 (recJ)
DNA repair and recombination proteins [BR:
spei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EHW89_05375 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EHW89_05375 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHW89_05375 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Toprim
AlaDh_PNT_C
DUF5760
DsrE
Motif
Other DBs
NCBI-ProteinID:
AZQ41922
UniProt:
A0A3Q9F477
LinkDB
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Position
complement(1098849..1101083)
Genome browser
AA seq
744 aa
AA seq
DB search
MITSKYDWQIATNFSDEGFIKKAKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLHD
PYELYDMDKAVTRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRF
TDGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEVLPD
AYAIIHPEHPEASYPFKYLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVKYGLSILKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGRLDDPNPAIEL
LTGFDEEEARDIALMINQKNEERKEIVQKIYDEAKTMVDLNKPVQVLAGEGWNPGVLGIV
AGRLLEELHQPVIVLNIENDLAKGSARSIEAVDIFEALDPHRDLFVAFGGHAGAAGMTLE
ASKLEALSQVLVAYSEDNQVDLSTKNELFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKIENARTMGAGNTHLKLKISQADAVFEVVAFGLGNLATEFSQTKNLELAVTLS
VNKWNGQTSLQLMLVDARVNGIQLFNIRGKNAPLPENVPVLRFSEEMPNLEKSRAVVVYD
LPKRLNQLKVIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQFAKLYKTIYQFPEFDIRYKL
KELAAYLKIDPILLIKMIQIFEELDFVTIQDGVMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgattacatcaaaatatgattggcagattgccacaaatttttcagatgagggttttatt
aaaaaagctaaaaaacttggcttggaggcttcggtagctaatctggtctaccagagaggg
atccagacagaagaagcactgcgagattttctagagcctagtttggaccagctgcatgat
ccttatgaactgtatgatatggataaggcagtgacgcgcattcgtcaagcaattgaaaat
tatgagcagatcttgatttatggagattatgatgcggatggcatgacttcggcttctatt
gttaaagaagcactagaacaacttggagcagagtgtcaggtctatttgcccaatcgattt
acagacggttatggtcctaatgccagtgtctacaagtattttattgaaaatcagggaatt
tcactcatcgttacagtggataatggtgttgcaggacatgaagcaatcgaactagctcag
tctatgggagtggatgtcattgtgacggatcaccattctatgccagaggtacttcctgat
gcttatgcaattattcacccagaacatccagaagcaagctacccattcaaatatttagct
ggttgcggtgtagcttttaagttagcaactgctcttttagaggaagtacaagtagagttg
ttagatctagtcgctattgggactattgcagatatggtcagtctaacggatgaaaatcgc
attctggttaaatatgggttaagcatcctcaaaaacactcaacgaatcggcttgcaggag
ctttttaagattgcaggtattcaggaaaatgaagtggatgaagaaacagttggttttcag
atagcccccagactcaatgctctaggtcgacttgatgatccaaatcctgctattgaactt
ctgacgggctttgatgaggaagaagcgcgtgacattgcccttatgattaaccagaaaaat
gaagagcgcaaagaaattgttcagaagatctatgatgaagccaagaccatggttgatctc
aataaacctgttcaggttctagccggtgaaggttggaatccaggtgttttgggaattgtg
gcagggcggcttttggaagaattgcaccagccggtcattgtcttgaatattgaaaatgat
ttagcaaaaggcagcgcccgcagcattgaagcagtcgatatttttgaagcgttagaccct
catcgagatttatttgtggcttttggtgggcatgcaggggcagctgggatgactctagag
gccagcaagttagaagcactcagccaggttttggtagcatatagtgaagataatcaagtg
gatttgtccactaagaatgagctctttttggatgaggaattatccttgccagatttgaca
ctagagaccctcaaaaactttgaaaagttagctccttttggcatggacaataaaaagcct
gttttttatttgaaagattttaaaattgaaaatgcccgcaccatgggagcagggaatact
caccttaagctgaaaatttctcaggctgacgcagtttttgaggtcgtagcttttggtcta
ggtaatcttgcaacagaattttcccaaactaaaaacttagagctggcggttactctgtcg
gtcaataaatggaatggtcaaactagtctccagcttatgctggtggatgctagggtcaat
gggattcagctctttaatatccgaggtaaaaatgctcctttgcctgaaaatgtgcccgtc
ctgcgtttttcagaagaaatgcctaatttggaaaagagcagagcagttgtggtgtatgac
ttgcctaaacgcctaaatcagctcaaagtaatcattcagcaaggacattttgaagcaatt
tactttaaaaatgagattgctcagccctattatctgacaggtttcggaacgagagaccag
tttgcaaaactctataaaacaatttatcaatttccagagtttgacattcgttataagctc
aaagaactagctgcttatctcaagattgacccaattctactcatcaagatgattcagata
tttgaagagctggactttgtgacaattcaagatggagtgatgcaagtaaacaaaaaagca
gaaaaaaaggctattgaaaacagccatatttatcaagaactgaagaaaacagtcaaagag
caggagcttatggctctaggaacggtgcaggaaatttatgattatctgatagaaaaagat
gaattttcaaactaa
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