KEGG   Solanum pennellii: 107004476
Entry
107004476         CDS       T04130                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
spen  Solanum pennellii
Pathway
spen03082  ATP-dependent chromatin remodeling
spen03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107004476
   03083 Polycomb repressive complex
    107004476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:spen03036]
    107004476
Enzymes [BR:spen01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107004476
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107004476
   HDAC complexes
    Sin3A-HDAC complex
     107004476
    BRAF-HDAC complex
     107004476
    REST complex
     107004476
    SHIP complex
     107004476
    MiDAC complex
     107004476
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107004476
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107004476
  Chromatin remodeling factors
   NuRD complex
    107004476
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107004476
NCBI-ProteinID: XP_015058161
LinkDB
Position
11:62544621..62552534
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
HDNDNHTDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgaggtccaaggacaaaatctcctacttctacgacggtgatgtaggaagcgtatacttt
ggaccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagcta
gcgcagtttcattctgctgattatgtagagttcttgaacagaataaccccagatactcag
aacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattg
aataataagctatgtgatattgcaataaattgggctggtggcttgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctg
aagtatcatccgcgggtgctctatattgatattgatgtgcatcatggtgatggtgtagaa
gaggccttttatttcactgacagggtaatgaccgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctcaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctctattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccactgctggtaactggaggtgggggatac
acaaaagagaatgtcgcccgttgttgggctctggaaactggagttcttttagacacagaa
cttcctaatgaaataccagacaatgattacatcaaatattttgcccctgattattcgctg
aagcttcctggtggacacatagagaacctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatctccgttgcctccagcatgctccgagcgtacagatgcaagag
gtaccacctgacttttatattcctgattttgatgaagatgaacaaaatccagatgagcgt
gttaatcaacatacccaagataagcatatccaacgtgacgatgagtattatgaaggcgac
catgacaatgataaccacactgatgatgcctaa

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