Solanum pennellii: 107004476
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Entry
107004476 CDS
T04130
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
spen
Solanum pennellii
Pathway
spen03082
ATP-dependent chromatin remodeling
spen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107004476
03083 Polycomb repressive complex
107004476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107004476
Enzymes [BR:
spen01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107004476
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
107004476
HDAC complexes
Sin3A-HDAC complex
107004476
BRAF-HDAC complex
107004476
REST complex
107004476
SHIP complex
107004476
MiDAC complex
107004476
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
107004476
Heterochromatin formation proteins
Other heterochromatin formation proteins
107004476
Chromatin remodeling factors
NuRD complex
107004476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
107004476
NCBI-ProteinID:
XP_015058161
LinkDB
All DBs
Position
11:62544621..62552534
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCLQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGD
HDNDNHTDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccaaggacaaaatctcctacttctacgacggtgatgtaggaagcgtatacttt
ggaccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagct
tatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagcta
gcgcagtttcattctgctgattatgtagagttcttgaacagaataaccccagatactcag
aacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattg
aataataagctatgtgatattgcaataaattgggctggtggcttgcatcatgccaagaag
tgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctg
aagtatcatccgcgggtgctctatattgatattgatgtgcatcatggtgatggtgtagaa
gaggccttttatttcactgacagggtaatgaccgttagtttccacaagtatggggataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctcaaggatggaatagatgatggcagtttcactagactcttcaaaaca
attatttcaaaggttgttgaaacatatttacctggcgcaatagttctgcaatgtggggca
gattcgcttgctggagaccgtctgggctgcttcaacctctctattgatggacatgctgaa
tgtgtaaggtttgtgaagaaatttaatttgccactgctggtaactggaggtgggggatac
acaaaagagaatgtcgcccgttgttgggctctggaaactggagttcttttagacacagaa
cttcctaatgaaataccagacaatgattacatcaaatattttgcccctgattattcgctg
aagcttcctggtggacacatagagaacctgaatagcaaatcatacattggcaccataaaa
atgcaagtgatggaaaatctccgttgcctccagcatgctccgagcgtacagatgcaagag
gtaccacctgacttttatattcctgattttgatgaagatgaacaaaatccagatgagcgt
gttaatcaacatacccaagataagcatatccaacgtgacgatgagtattatgaaggcgac
catgacaatgataaccacactgatgatgcctaa
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