Solanum pennellii: 107004680
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Entry
107004680 CDS
T04130
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
spen
Solanum pennellii
Pathway
spen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107004680
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spen01002
]
107004680
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107004680
Enzymes [BR:
spen01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
107004680
Peptidases and inhibitors [BR:
spen01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
107004680
Ubiquitin system [BR:
spen04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
107004680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
ubiquitin
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
107004680
NCBI-ProteinID:
XP_015058468
LinkDB
All DBs
Position
11:64941376..64963540
Genome browser
AA seq
1116 aa
AA seq
DB search
MTIMTPAPTDQEEEEMLVPRSDLVFEGPQPMEAQAETGNDVEKQPPEDPQTSRFTWKIDN
FSRLNVKKLYSDPFVVGGYKWRILIFPKGNNVDYLSMYLDVADSANLPYGWSRYAQFNLS
IVNQIHNKYSIRKETQHQFNARESDWGFTSFMPLGELYDPNKGYLVDDTCVVDAEVAVRK
IVDYWSYDSKRETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSASIP
LALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEEKMKSTVVE
GTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCADVYASFDKYVEVERLDGDN
KYHAEQYGLQDAKKGVLFMDFPPVLQLQLKRFEYDFSRDTMVKINDRYEFPLQLDLDREN
GKYLSPEADGSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKR
ALEEQYGGEEEQLPQTNPGFNNTPFKFTKYSNAYMLVYIRECDKEKIMCNVDEKDIAEHL
RARLKREQEEKEQKKKEKAEAHLYTIIKVSRDEDLRQQIGKDIHFDLVDYDKVRSFRIQK
QTLFSIFKEEVAKEFGVPVQSQRFWLWAKRQNHTYRPNRPLTHLEEAQTVGQLREASSKV
QNAELKLFLEVELGLDLRHIPPPDKTKDDIMLFFKIYDPEKEELRYAGRLFVKGTSNPTE
ILNKLNEMAGYAPDQEIELYEEIKFEPIVLCEPIDKKFAFRTNQLEDGDIVCYQKSLSPE
SRQKLRYPDVPSFLEYVQNRQVVHFRSLEKLKEDDFCLELSKINTYDEVVERVAQRLGLD
DPSKVRLTPHNCYSQQPKPQPIKYRGVDTLGDMLVHYNQTSDILYYEVLDIPLPELQGLK
TLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKI
FPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFTKETAQNQMQIQNFGEPFL
LVIHEGETLAQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYG
AWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaccataatgactcctgctccaaccgatcaggaagaggaggagatgcttgttccgcgt
tcagatttggtatttgaaggacctcagcctatggaagcacaagcagaaaccggcaatgat
gtggaaaagcagccaccagaggatcctcaaacttcaaggtttacttggaagatagataac
ttctctaggttgaatgtaaagaaactatactctgacccttttgttgtcggtggctataaa
tggcggattttaatttttcccaaggggaacaatgttgattacctgtccatgtatctggat
gttgctgattcagctaatttaccttacgggtggagtagatatgcccagttcaacttgtca
attgttaaccaaattcataacaagtactccatcagaaaagagacgcaacaccaattcaat
gccagagaaagtgattggggtttcacatcctttatgccacttggtgaactatatgatcca
aacaaaggttatcttgttgatgatacatgtgttgttgatgctgaggtagctgtgcgaaaa
attgttgactattggtcgtatgactcaaaaagggaaactggctttgttggattgaagaac
caaggagctacctgttatatgaactcacttcttcaaactctctaccatattccttacttc
aggaaggctgtataccacatgcctacaactgaaaatgatatgccctctgctagtatccct
ctagcgttgcaaagcttattctataagctccagtacagtgacaacagtgtagcaacaaag
gagttgacaaaatcattcggatgggacacatatgattctttcttgcagcatgatgtgcaa
gaactcaatcgtgttctctgtgaaaagcttgaagaaaaaatgaagagtactgttgtggaa
ggcactatacagcagttatttgaagggcaccatatgaactatattgagtgcatcaatgtg
gactacaaatctacgagaaaggagtcattttatgatcttcagcttgatgtcaaagggtgt
gctgatgtttatgcttcgtttgataaatatgttgaagttgaacgtcttgacggcgataac
aagtaccatgccgaacagtatggtttgcaggatgctaagaagggtgtcttattcatggat
ttcccccctgtcctgcagcttcagttaaagcgctttgaatatgatttttcacgggacact
atggtaaagataaatgacaggtatgagttccctctgcaactcgatctagatagagagaat
ggtaaatacttgtcgcctgaggcagatggaagtgtcagaaacctttacacacttcacagt
gtattagtccacagtggtggtgtgcatggtgggcactattatgctttcataaggccaact
ctttcagatcaatggtataaatttgatgatgaacgtgtgactaaagaagatgtgaaaaga
gctctagaagagcagtatggaggagaagaagagcagttgccacaaacaaatcctggattt
aataatactcccttcaaatttactaagtactcaaatgcttacatgctggtctatattcgg
gaatgtgacaaagagaaaataatgtgtaatgttgacgagaaggacattgctgagcacctc
agggcaaggttaaagagagaacaagaagagaaagagcagaagaagaaggagaaagcagag
gcacacctttacacaattataaaggtttctcgtgatgaagacctcagacagcagattggg
aaggacatacattttgatttagtggattatgacaaagttaggagttttcgcattcagaag
cagacactttttagcatttttaaggaggaagttgccaaagaatttggtgtaccagtgcaa
tctcaacgtttttggctatgggcaaagcgccagaatcatacatatcgtccaaatcggcca
ttaacacatctcgaagaagctcaaactgttggacagttgagggaagcgtcaagtaaggtt
cagaatgcagagctaaaattgttcttggaagtggagcttggactggacttgagacacatc
cctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgag
aaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaa
atcttgaacaaactaaatgaaatggctggctatgcccctgatcaagagattgaactatat
gaggaaataaaatttgaaccgattgtcttgtgtgaacccattgacaagaaatttgctttc
cgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaa
agtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgc
caggtggttcacttccgatccttagaaaagttgaaggaggatgatttctgtttagagctg
tcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggat
gatccatccaaagtaaggctcacaccccataattgttactctcagcaacctaaaccccag
ccaatcaagtacagaggtgttgacacccttggagatatgctggtccactacaatcagaca
tctgatattttgtactatgaagtactggacattcctttgccagaattgcaaggtttaaaa
accttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcaga
ctaccaaaacaatctactgttggtgatgtaattaatgatctaaagacaaaggttgagttg
tcaaatccagatgcagaattaagattgctagaggtcttctaccacaaaatttataagata
tttccaacaagtgagaagatagagaacataaatgaccagtactggacattgcgggccgaa
gagattcctgaagaagagaagaatctaggcccgaatgctcgtttgattcatgtgtatcac
ttcactaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctc
ttggttatccatgagggtgagactttagctcaagtgaaggtgcgaatacagaagaaattg
caggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcct
gagtaccttgaggactcagatatattgttcaaccgtttccagcgaaaggatgtttatggt
gcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgca
gcatatcagaatcgtccgacgtacgagaagcctgttaaaatttacaactag
DBGET
integrated database retrieval system
