Solanum pennellii: 107017658
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Entry
107017658 CDS
T04130
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
spen
Solanum pennellii
Pathway
spen04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107017658
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
107017658
NCBI-ProteinID:
XP_015073343
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Position
4:70868486..70873753
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AA seq
679 aa
AA seq
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MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSL
AYLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILT
AQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRIISGDA
SRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT
SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH
PYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVGYKCD
PHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQA
LSQMWQNDAAARAAIENGMEEGHGDSADSPIAFPQAMHMEMDREPVRNNPVIVTVRRYED
QMVPSMTSSLFRAEDEENSVDIRNSLVESRAEVPTDINVAEGHRRDTRDQAVMQTARTNA
TPHFNFAVGRRNSEDSTAESSSSTRERDGGVVPTWSPSSSNYSDQYVGDDNGIGTSSSYL
QRHPQSHQLMNWQRLSQTG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataac
cctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcct
gaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttg
gcttatcttgattcatctttgaagagtcttggaacttcccttattacaaagagatctact
gatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttc
aatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaaca
gctcaaggtatatcagtgcgttcctttaatgctgatttgctctatgaaccatgggaagtt
aatgacgatgaaggtcgcccgttcacaacattttctgctttttgggagaaatgccttagc
atgccttatgatccagaagctccacttcttcctcccaaaaggattatatctggtgatgca
tcaagatgcccttcagacaacttggtatttgaagatgaatcagagaaaggaagcaatgca
cttcttgctcgggcatggtcacctggctggagtaatgctgataaagcacttactactttc
gttaatggaccattacttgagtactcgcagaaccgtcggaaagctgatagtgcaacaaca
tcctttctatctccacatttacattttggggaagtcagtgttcgtaaggtattccatttt
gttcgcatcaagcaagttctctgggccaatgaaggaaataaagctggtgaagagagtgtt
aatttgttccttaagtccattgggctgagggagtactcaagatacatgagttttaatcat
ccttatagccatgaaaggcccctgcttggtcacctaaggtacttcccatgggtagtggat
gaaggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggt
atgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagt
ttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacaca
ttgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtacccta
cctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgac
cctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatgg
atacaccatccatggaatgcaccagaatctgtgcttgaagctgctggtattgagctgggt
tccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagct
ctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaa
gaaggacatggtgactctgctgactccccaatagcatttcctcaggctatgcatatggaa
atggaccgtgaaccagtgaggaacaaccccgtaatagttactgttcgacgctatgaagat
caaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactctgtg
gacattagaaattcacttgtggaaagtagggcagaagttccaacagacataaatgtagct
gaaggtcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgcc
accccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatct
tccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagt
aactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttg
caaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtga
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