Solanum pennellii: 107024819
Help
Entry
107024819 CDS
T04130
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spen
Solanum pennellii
Pathway
spen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107024819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107024819
Enzymes [BR:
spen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107024819
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107024819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
107024819
NCBI-ProteinID:
XP_027774278
LinkDB
All DBs
Position
7:9016300..9063183
Genome browser
AA seq
1261 aa
AA seq
DB search
MATSAVDGGGNSSGGGEDIKFSVMVSLFKWIQKSKSSVKKRSKFRKFMDTFCRKPQDNFV
AMRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNF
SLVAAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRKTNAQEMKWII
MIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR
PQLALRVSNVSAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMS
DVITQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILY
VGDTSVIHRSLKERQEILQKVVKPRKGRLEILVPNGGLNAHRLSGEPCWSIIAHSVDDVD
KFFKGTVENRFVSCSSILTLLSPTTRFLYYIYVILMHPTKQTPSVFDLGLKFPPFPSFVA
QFLVGLAEPPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAPPTFYQ
VTNNAKERPDVWVESPEKSIIVSITSDIRTTRTEVFAAPYSLRFPRIDKVRYDKPWHECL
DVQSFVDLVHSTNGTTQREDNYGVEQDHESKTIRSSRKREKKNVSAVPSHFVQTDVSRIK
GETSMFSDMVFYFANVPSSHTLESLHKMVVEHGGAFSMNLNKSVTHCIAAESRGIKFQAA
KLHGDVIQCSWLFDCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFYSDISIEEI
KLLLRNIEHPEDSKTVEYYKKKYCPKDEWARFHGCCIYFFIPKQCLEYSDCKVLVELAMK
RMKVEISVGGGKVGDNLFHATHVVVMSLPEIDVKFNEVLNSFSEAEKHVLYNTKLHVVGA
RWLEDSLKEDQKVLEESYSLKPSNFQMSISEKSRHDKQKGDSEKCKRPSSPDKHGGQIKE
KGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINIPRTVKRKVTSSRAKIHENESDE
SATSGLSRHDKQKGDSEKCKRPSSPDKHGGQIKEKGISDQGRAITLPKRGRKRDRGRPTG
SATAKGKVGINIPRTVKRKVTSSRAKIHENESDESATSGEHLCNDEGEAAVGSYETTAVR
SSGIQNEDVQDLELSEDGKTLPPGTAECSVISERLDKAHETSYGSGNIARGKDKVDEKLE
DPVDPVQAMLLHMIPHLDSKPTRSIDALVKDDKPEADTNPSLKKKKKVSYKDVAGELLKD
W
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagacggtggtggtaatagtagtggtggcggagaagacataaaa
tttagtgtaatggttagcctttttaagtggatacagaagagtaaatcatcagtgaagaag
cggtccaagttccggaagtttatggataccttctgcaggaagcctcaggacaatttcgtt
gccatgcgccttattctccctggcctcgaccgtgagcgtggctcttatggccttaaggag
cacgtcctcgctacttgcctcattgacgcacttgcaatgtcccgcgactccgatgatgca
cgccgtctccttaactggcggaaaggcggtcccaaaactggctctaatgccggcaacttc
tctcttgttgccgctgaggtcctccagcgcagacagggaatggcttctgctggtctaaca
attaaggaattaaatgacttccttgatcacttggcctcaagtgaaaatagagcagagaag
acttcaattctgtctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattata
atgataatcctcaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattc
catccagatgcagaggacttattcaatgtcacatgcgatctaaaattagtttgtgaaaag
ttgagggacagaagtcaacggcataaacgccaggatattgaagttggaaaacctgtccgc
cctcagctggctcttagggtcagcaatgtatctgctgcatggaaaaagctttacgggaaa
gaagtagttgttgagtgcaaatttgatggggatcgcatccagattcacaaaaataattct
gagctaaacttcttttcaagaaactttctggatcatcaagagtatgctcatgggatgtca
gatgttattactcagaatatccttgctgacaagtgcatactcgatggtgaaatgttggtt
tgggatgcatcaataaaccgctttgcagagttcggttccaatcaagaaatagcaaaggca
gcaagagagggtcttgatagtgataggcagttgtgttatgttgcgttcgatattctttat
gttggggataccagtgttattcatcggagcttgaaggaacgtcaagagattctccagaaa
gttgtgaagcccagaaaaggccgtttagaaattttggtccctaatggcggtcttaatgct
catcgtctttctggggagccctgttggtcgatcattgctcatagtgttgacgatgtcgat
aaattctttaaaggaactgttgagaataggtttgtttcgtgttcatctattctaactctc
ttgagtcccacaacaagatttttatattacatttatgttattctaatgcaccctaccaaa
caaaccccaagtgtttttgatttgggactcaagtttcctccttttccttcttttgtagct
caatttctggtgggtcttgctgagcctccggctccaaatacatatcccagaaggttcatt
tctttttgcagagtaggcactggagtttctgatgaggaacgcaataccatagtaactcga
ttaaaaccttatttcaggaagtatgagtacccgaagcaggcaccaccaaccttttatcaa
gtaacaaataatgcaaaagagcgacccgacgtgtgggttgaaagtccagagaaatccatc
attgtttcaattacaagtgatattagaacaacaagaactgaggtgtttgctgctccatac
agcttgagatttccgcgtattgataaagtcagatatgacaagccttggcatgagtgtctt
gatgtgcaatcatttgttgatctggtacattcaaccaatggtaccacgcagagggaggac
aattatggggttgagcaggatcatgaatcaaagaccattaggtcgtcaagaaaacgagag
aagaagaatgtctctgcagttccttctcattttgttcagactgacgtgtctcgaattaag
ggtgaaacatcaatgttctctgacatggtgttttattttgctaatgtgccttcatcacat
acactagaatccttgcataaaatggtggtcgagcatgggggtgctttctccatgaatttg
aataagtcagttactcattgtatagcagctgaaagtagaggtatcaagtttcaagctgca
aaacttcatggagatgttattcaatgctcttggctctttgactgctgtctgcaaaagaag
ctccttcctttacagccaaagtattttcttttcctttctgattcaacaaagaaaaagatg
gaagcagaagtggatgaatattctgattctttctactccgacatcagcattgaagaaatt
aaactgcttttgagaaatatagaacacccagaagactccaaaactgtcgagtactacaag
aaaaagtactgtcccaaggatgaatgggctcggtttcatggttgctgcatttattttttc
ataccaaagcagtgtctggaatattcagattgcaaggttttagtggaacttgctatgaag
aggatgaaagttgaaatttctgtgggtggtgggaaagttggtgacaatctttttcatgcc
acccatgtcgtcgtcatgtctctaccagagatcgatgtaaagttcaatgaagtgttaaat
agtttctcagaggctgagaaacatgttttgtacaatacaaagctgcatgtagtcggagca
cggtggttggaggattcccttaaagaggaccagaaggtgcttgaggagagttatagcctt
aagcctagcaattttcaaatgtcaatctctgagaagagtaggcatgataagcaaaaaggt
gattctgaaaagtgcaaaagaccatcttcccctgataaacatggaggacaaatcaaagaa
aaaggaatttcagaccagggccgagctatcacactaccaaagaggggcaggaaacgagat
agaggaagacctactggtagtgctacagcaaaagggaaagtggggatcaacattccacgt
acagttaaacgcaaggtcacaagtagtcgtgctaagattcatgaaaatgaatctgatgaa
agtgctacttcaggactcagtaggcatgataagcaaaaaggtgattctgaaaagtgcaaa
agaccatcttcccctgataaacatggaggacaaatcaaagaaaaaggaatttcagaccag
ggccgagctatcacactaccaaagaggggcaggaaacgagatagaggaagacctactggt
agtgctacagcaaaagggaaagtggggatcaacattccacgtacagttaaacgcaaggtc
acaagtagtcgtgctaagattcatgaaaatgaatctgatgaaagtgctacttcaggtgag
catctttgtaatgacgagggtgaagcggctgttgggagctatgaaactactgcagtacgt
agctcaggaattcagaatgaggatgtacaggatctggaattgtctgaagatggtaaaaca
cttcctccggggactgccgaatgcagtgtgatcagtgaaagattggacaaagctcacgaa
acttcatatggaagtggaaatattgccaggggcaaagacaaggtggatgaaaagctggaa
gaccctgttgatccagtccaagctatgctattgcatatgataccacacttggatagtaag
ccaacaagaagcatagacgctcttgtaaaagacgacaagccagaggcagatactaatccc
agtcttaaaaagaaaaagaaagttagctataaagatgtagctggtgagttgctcaaagat
tggtga
DBGET
integrated database retrieval system
