Solanum pennellii: 107031318
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Entry
107031318 CDS
T04130
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107031318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107031318
03019 Messenger RNA biogenesis [BR:
spen03019
]
107031318
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107031318
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107031318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
107031318
NCBI-ProteinID:
XP_015088129
LinkDB
All DBs
Position
9:2515280..2523878
Genome browser
AA seq
1043 aa
AA seq
DB search
MEMEGSRRPFDRSRLEPGPKKPRLVEAPIGTDRGSNGRSFIPQRGPGNSRIRASDKGGDS
ENSDSIRGSFQQQQQQTQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLQAAKAIAA
TICNNIIEVPTEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFSKAYRQVEPSVHPGMR
HLFGTWKGVFPPQQLQLIEKELGFTTGVNGSSSGTSRPDPQAQRPAHSIHVNPKYLEARQ
RLQQSTRAKGAASDISSTVNVNEDAERPERTTSVNSGRSWIDPSIKRAQKEKLNEHVPEK
TTSAAYGDSDYASDLPRRAAFGVGRGGERFKEQGFDKPWYDSGAGKILSQRSSLDTKHDL
QSIPQKSATSDAHPQLIPSLPNRTSTLTDRSWKNSEEEEYMWDDVNNAAKDRWASEDSDK
SDLENQLRRPQSIREVGLRADSEASADSPSAEERGPASFGNQMSAMWSRGSHALDGVRHS
ASVQGAPVHSEGYQTSFSGLSKVANSVSRASYKLQTGSVHVGTPNIGPMNATLESRGSIV
QHGETLRAASPSAQSPMHHRPPSPSLITSNCNQVINSPAEQYQMQTSSRSDPRLSQISRR
SNLDPRNQYAQESLTMPSRNTVSVNSQRQHPPSLQNSSALSSSHQLRQKVQRESLESEYS
GQTKNSTVPEISGFPDPSSTSSLLAAVLKSGVIGNKSSSGTTSSSLDKSALSSQDSAQPH
PAQFSTSGPRIPPASVTSLSMDRNASNSPNYSQRNVEQPPLPPGLPPTLAGTASSQMPNA
PNTASSPLSSILSTLVAKGLISASKKDPPIYTPSDTPPQTQNLIPPASSISTPALSAPIS
SSVPSSAHKDELSHSKPSAKTPEVLLQSMKEEAKSLIGLVFKPDVIRNSHPAVISDLVDD
VPLQCGICGFGFKFQVKLDRHLEWHSLRNPDVKLLNNSRKWYLNSGEWIAAFGGLPCGDK
SEGPAGGSSETSECTETMVPADECQCVCVLCGEFFEDFYNEESDEWMFKDAVYMSIPSES
DCQGPIVHKNCISESSCQELGFA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagggttctcgtagaccatttgatagatcaagattggagccaggacctaag
aaaccaagattagtcgaagccccaattggaactgaccgaggttctaatgggagaagcttt
attcctcaacggggacctgggaattcgaggattcgagctagtgataaagggggagactcg
gaaaacagtgattcgattcgcgggtcttttcaacagcagcagcagcagacgcagcatcag
gagctagtgagccaatataagacggctttagctgaactaacatttaattcgaagccgata
attacaaacttgactattattgctggtgagaatttgcaagcggccaaggcaattgctgct
actatctgcaacaacattattgaggttcctactgagcaaaagttgccatctctatatctt
ttggacagtattgtcaagaacatcgggcgggattatatcaagtattttgccaccaggctg
cctgaggttttctccaaagcttatagacaggttgaaccttcagtacatcctgggatgcgg
catctttttggaacttggaaaggagtattcccccctcaacaactacaattaattgagaag
gagctcggatttactaccggtgtcaatggctcatcatcagggacatctaggcctgatcca
caggctcaacgacctgcacatagcattcatgtaaatccgaaatatctggaggcacggcaa
cgtctacagcaatcaaccagggcaaaaggagcagctagtgacatcagcagtactgtcaat
gtaaatgaggacgcagagagaccagagagaacgaccagtgttaattctggaagatcatgg
attgatccctccattaagcgtgctcagaaagaaaagttgaatgagcatgttcctgagaaa
actaccagtgcagcatatggggattcggattatgcttctgatctgcctagacgtgctgcc
tttggagtaggaagaggaggtgaaagatttaaagaacaggggttcgataaaccttggtat
gattccggggctggtaaaatattgagccaaagaagcagcttggacactaagcatgattta
caaagtataccccaaaaatctgcaacctctgatgcacatccacaactaataccgtcctta
ccaaatagaaccagtactttaacggataggagctggaagaattctgaggaagaggagtac
atgtgggatgatgtaaataatgcagctaaagaccggtgggcatctgaggattcagataaa
tctgacttagaaaatcaactacggagaccacaaagcataagggaggtcgggttaagggct
gatagtgaagcctcagctgattctccttctgccgaagagagagggccagcttcttttggg
aatcaaatgtcagcaatgtggtccaggggatcacatgctttagatggagttaggcattca
gcttctgttcaaggtgctccagttcattcagaaggctatcaaacttctttcagtggattg
tcaaaagttgcaaattcagtaagtagggcatcttacaagttacagacaggttcagtccat
gttggaacgccaaatattgggccgatgaatgcaactctggaatccaggggatcaatagtg
caacatggagagactctcagagctgcctctccctctgctcagtcaccaatgcatcaccgt
cctccatccccatcacttataacaagcaactgtaatcaagtaattaacagtcccgctgag
cagtaccagatgcaaaccagttctcgttctgatccaagactatcccaaatctcaaggagg
tcaaatctagatcctcgtaaccagtatgcccaggaatctctgacaatgccatctcggaat
accgtttcagttaattcacaaagacaacaccctccaagtttgcagaattcgtctgccttg
tcttcttctcatcagttgcgacagaaggttcagcgggaaagcctggaatctgaatattct
ggtcaaaccaagaattcaacagttcctgagatttcaggttttcctgatccctctagcact
agcagtttgttggctgctgttttgaagagtggagtcattggtaataaatcgagttctggt
actacgtcaagttctcttgataagagtgctctgtcatcccaagacagtgcacagcctcat
cccgcccagttttccacatctgggcctaggataccgccggcctctgtcactagtctatcg
atggacagaaatgcttcgaactctccaaattattcccagagaaatgtagaacagccacca
ttgccacctggtctgcctccaactcttgcaggtactgcatcatcgcagatgccgaatgca
ccaaatactgcttccagtcctctttcaagtattttgagtacattggtggcgaaggggtta
atatccgcatcaaagaaggaccctcctatttatactccttcagatacacctcctcaaact
cagaaccttattccacctgcaagctccatttcaactcctgctttatctgctccaatatct
tcatctgttccttcttcagctcataaggatgaactttcacactcgaaaccttctgctaaa
actcctgaggtcttacttcagtccatgaaagaagaagcaaaaagtctcattgggcttgta
tttaagccagatgtgattcggaattctcatcctgctgtcatcagtgaccttgttgatgat
gttccacttcagtgtggaatatgcggttttggatttaaattccaagtgaaacttgataga
cacttggagtggcactcattgagaaatccagatgtcaaactgttgaataattcaagaaag
tggtatttaaattctggggaatggattgctgcatttggtggcctcccttgtggcgataaa
tccgaagggccagctggaggttctagtgagacatcagaatgtactgagaccatggttcct
gcagatgaatgtcaatgtgtgtgtgttttgtgtggtgagttttttgaagacttctacaat
gaagaaagtgatgaatggatgttcaaagatgctgtttacatgagtattccaagtgaaagt
gattgtcagggtccgatagtccacaagaactgtatttcagaaagttcttgtcaagagttg
gggtttgcctag
DBGET
integrated database retrieval system
