Streptomyces peucetius subsp. caesius: CGZ69_14155
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Entry
CGZ69_14155 CDS
T07792
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
speu
Streptomyces peucetius subsp. caesius
Pathway
speu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
speu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGZ69_14155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
speu03400
]
CGZ69_14155 (mfd)
Enzymes [BR:
speu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGZ69_14155 (mfd)
DNA repair and recombination proteins [BR:
speu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGZ69_14155 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATW48883
LinkDB
All DBs
Position
complement(3124811..3128350)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSLHGLLDAVVSDPALAEAVRAAADGHRMHVDLVGPPAARPFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPGEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSSDDP
AAGPVQVVVAPVRSVLQPQVKGLGDLEPVALRTGRQADLEEVVEGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRQRAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPEGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAMSSAGEAPIDVDAASLWGIADVRDRARELG
MMWWSVSPFASDASDVEDDTLKLGMHAPEAYRGDTARALADTKGWLADGWRTVFVTEAHG
PASRTVEVLGGEGIAARLEADLADITPSVVHVACGSVEYGFVDPALKLAVLTETDLTGQK
AAGKDGQRMPTRRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAP
AKRGQPGDRLYIPTEQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIRL
YSARMAAPGHAFGPDTPWQRELEDAFAYVETPDQLSTIAEVKEDMEKTVPMDRLVCGDVG
YGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVTRALSRFQSETA
AKATLEGLRDGSVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDV
LTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQ
VFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIV
ESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLA
TIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLE
GGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIKAVREELTDRYG
KLPEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVIKP
GVHQILVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtatctgacccggcgctcgccgaagcggtc
agggcggccgcagacggccaccgtatgcacgtcgacctggtgggaccgcccgccgcgcgg
cccttcgccgtggccgcgctggcccgtgacacgggccggccggtgttggccgtcaccgcc
accgggcgggaggccgaggacctggccgcggcgctgcggtcgctgctgcccggcgagggc
gtcgtcgagtacccgtcctgggagacgctgccgcacgagcggctctcgccccgctccgac
accgtcggccgccgcctggccgtgctgcgccgcctggcgcacccgtcgtccgacgacccg
gccgcgggccccgtgcaggtcgtcgtcgctcccgtacggtccgtgctgcagccgcaggtc
aagggtctcggcgacctggagcccgtggcgctgcgcaccggacggcaggccgacctcgaa
gaggtcgtggaggggctcgcggccgcggcgtactcgcgggtggaactggtggagaagcgt
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
cttcgggtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtggccgac
cagcgctccctggaggtggcggagcacggactgtgggcgccgccgtgccgcgagctgctg
ctgacggacgacgtgcggcagcgggccgccgcgctcgcggaggcccatccggagctgggc
gaactgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtcgctggcgccg
gtgctcgtcgacgagatggaactgctgctggacgtgctgcccgagggcgcgatggccgtg
gtctgcgaccccgagcgggtgcgtacgcgggcggcggacctggtcgccaccagccaggag
ttcctgcaggcgtcctgggcggcgacggcgatgtccagcgcgggcgaggccccgatcgac
gtcgacgccgcgtcgctgtggggcatcgcggacgtacgggaccgggcgcgcgagctcggc
atgatgtggtggtccgtgtccccgttcgcctccgacgcctccgacgtggaggacgacacc
ctcaagctcggcatgcacgccccggaggcgtaccgcggcgacaccgcccgggcgctggcc
gacaccaagggctggctggccgacggctggcgcaccgtcttcgtgaccgaggcccacgga
cccgcgtcccggacggtcgaggtgctcggcggcgagggcatcgcggcacggctggaggcc
gacctggccgacatcacgccgtccgtcgtccatgtcgcctgcggttcggtcgagtacggc
ttcgtcgacccggcgctcaagctggcggtcctcacggagaccgacctgaccggccagaag
gcggcgggcaaggacggccagcggatgccgacgcggcgccgcaagaccatcgacccgctg
accctcgaggccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgag
atggtgcagcgcacggtccagggcgcgacccgtgagtacctgctcgtcgagtacgcgccg
gccaagcgcggccagcccggcgaccggctctacatccccacggagcagctggagcaggtc
accaagtacgtgggcggcgaggccccgacgctgcaccggctgggcggcgccgactggacg
aagaccaaggcgcgcgcgaagaaggcggtcaaggagatcgccgcggacctgatcaggctg
tactcggcccggatggccgcgcccggacacgccttcgggccggacaccccgtggcagcgg
gagctggaggacgccttcgcgtacgtcgagacgcccgaccagttgtccacgatcgccgag
gtcaaggaggacatggagaagacggttccgatggaccgtctggtctgcggcgacgtcggc
tacggcaagacggagatcgcggtcagggcggccttcaaggcggtccaggacggcaagcag
gtcgccgtcctcgtcccgacgaccctcctcgtccagcagcacttcggcacgttctccgag
cggtactcgcagttccccgtcgtcacgcgcgcgctgtcccgtttccagtcggagaccgcg
gcgaaggccacgctggaggggctgcgggacggctcggtcgacatcgtgatcggcacgcac
cggctgttctcctcggagaccaggttcaaggacctgggtctcgtcatcgtcgacgaggag
cagcggttcggtgtcgagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtg
ctgaccatgtccgcgacccccattccgcgcacgctggagatggcggtgaccggcatccgc
gagatgtccacgatcaccaccccgccggaggagcggcacccggtgctgaccttcgtcggc
ccgtacgaggagaagcagatcggcgcggccgtccggcgtgaactgctgcgcgagggccag
gtcttctacatccacaaccgcgtcgagtccatcgaccgggccgcggcccggctccgggag
atcgttcccgaggcgcgtatcgccaccgcccacggccagatgtcggagtcggcgctggag
caggtcgtcgtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtc
gagtccggtatcgacatctccaacgccaacacgctcatcgtggagcgcggcgacaacttc
ggcctctcgcagctgcatcagctgcgcggccgcgtcggccgcggccgcgagcggggctac
gcgtacttcctctacccgccggagaagcccctcaccgagaccgcgcacgagcgccttgcg
acgatcgcccagcacaccgagatgggcgcgggtatgtatgtggccatgaaggacctggag
atccgcggcgcgggcaatctgctcggcggcgagcagtccggccacatcgcgggcgtcggc
ttcgacctgtacgtccgcatggtcggcgaggcggtcgccgactaccgcgcgtcgctcgag
ggcggtgtggaggaggagccgccgctcgaggtcaagatcgagctcccggtcgacgcgcat
gtgccgcacgactacgcccccggcgagcggctgcggctccaggcgtaccgggcgatcgcc
tccgccaacacggaggaggacatcaaggcggtccgcgaggagctcaccgaccgctacggc
aagctgccggagcccgtggagaacctgctgctggtggccggtctgcggatgctggcgcgc
gcgtgcggtgtgggcgagatcgtgctccaggggccgaacatccgcttcgcaccggtggag
ttgcgcgagtcgcaggagctgcggctgaagcggctgtacccgcgcacggtgatcaagccc
ggggtccaccagatcctggtgccgcgcccgacgacggggaagatcggcggcaagcccgtg
gtgggccgcgaactgctggcgtggacgggcgagttcctgacgacgatcctgggttcgtga
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