Sphingobium sp. EP60837: EP837_02332
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Entry
EP837_02332 CDS
T04432
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EP837_02332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphb03400
]
EP837_02332
Enzymes [BR:
sphb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EP837_02332
DNA repair and recombination proteins [BR:
sphb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EP837_02332
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANI78733
UniProt:
A0A173L0C7
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Position
1:2379103..2381595
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AA seq
830 aa
AA seq
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MAEADPLKEYNRKRDFTRTKEPAGKQGHTSGNSFIVQKHDASRLHYDFRLELDGVLKSWA
VTRGPSLDPADKRLAVRTEDHPLSYASFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSAKD
LPEGHLHFILHGQRMKGEWLLIRLKPRPGEGKRENWLLRKIDDAHAGPAEDLVGRELTSI
KTGRTMGEIAANAPAISLKGKRGKAFDAAMAEAEQAAPARAKPKRRTGKPPPFQAPQLAT
LVDAVPTGSQWLHEIKYDGYRTLLSVAGDRVQVFTRTGLDWTERFASLAKEVAGMGLPST
LIDGEIVALGPDGNPDFSTLQQVLKGEAKGALHLFAFDLLSLDGEDLTWLPNIARKEKLA
ALLGQGSAHVHFSDHIVGAGEKLFRTMCDAGQEGIICKRADAPYRGARTKNWLKVKCTRR
QEFVIVGWTPSSASGRSLRNILLAQNGENGLVYAGKVGTGFNARNSDGLLRQLKARTRKS
PALTVPRAEARGAQWVRPDVVAEIAFVEFTSDNVVRHGSFLGLREDKQAGEVTREQVMTT
PPSESDVHVSNRDRLIFPEAKVTKGQLADYYEAAGAIMLPWIAHRPISLVRCPQGRAKKC
FFQKHDSGSFGDHVKHVPIREKDGDEQDYLYVDDIDGLVACVQMGTIEFHGWGSRVEDVE
KPDRLIFDLDPDEGLDFEDVKKAARDIRRTLEDIGLISFPMLSGGKGVHVVVPLTPEAEW
PAVKDFADRFARALAAAEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARENA
PVAAPVTWDELDDIERAGSYTIADVDQLVERAGSRQLRGWGEARQTLPDY
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagccgatcctctgaaggaatataatcgcaaacgcgatttcacccggaccaag
gagccggcgggcaaacagggccataccagcgggaacagcttcatagtccagaagcatgat
gcctcgcggctgcattatgacttccggctcgaactggatggcgtactcaagagctgggca
gtgacgcgcgggccgagcctggatcctgccgacaagcggctggcggtgcggaccgaagat
catccgctgtcatacgccagtttcgaagggacgatcccgaagggagaatatggcgggggc
accgtgatgctttgggatgagggaacatgggagcctgttccgggtaagagcgccaaggac
ctgccggaaggacatctgcatttcattcttcacgggcagcggatgaagggcgaatggctc
ctcatccggctgaaaccccgccccggcgaagggaagcgggagaactggctgcttcggaag
atcgacgacgcccatgccgggccggccgaagatttggtcgggcgagaactgaccagcatc
aagactggccgaacgatgggtgagatcgccgccaacgcacccgccatttcgctgaagggc
aagagaggcaaggcgttcgatgccgccatggcggaggctgaacaggctgcgcccgcgcgt
gccaagcccaagcggcggaccggcaagccgccgccattccaggcgccgcagctcgccaca
ctcgtcgacgcggtgccgaccggcagccaatggctgcacgagataaagtatgacggctat
cgcactctgttgagcgtggcgggagatcgcgtacaggtgttcacgcggaccggcctcgat
tggaccgagcggttcgcttcgctcgcgaaagaagtggcgggcatgggtttgccctcgacc
ttgatcgatggggagatcgtcgcgctgggacctgacggaaaccctgatttttccacattg
cagcaggtcttgaagggtgaggcaaagggcgcgctccacctttttgcctttgaccttctg
tccctggatggggaggacctgacatggcttcccaacatcgcgcgcaaggaaaagcttgca
gccttgctcgggcaggggagcgcccatgtgcatttttcggaccatatcgtcggcgctggg
gagaaactgttccgcaccatgtgcgatgccggccaggaaggcatcatctgcaaacgcgcg
gacgctccctatcgcggcgcgcggacgaagaactggctgaaggtcaaatgtacccgccgc
caggagttcgtcatcgtcggatggacgccaagctccgcaagcgggcggtcgcttcgcaac
attctgcttgcccagaacggcgagaatggcctcgtctatgctgggaaggtcgggaccggc
ttcaacgcgcgcaacagcgacggtttgctccgccagttgaaagctcgaacccgcaaatcg
cccgcccttacagtgccccgggccgaggcgcgcggcgcgcaatgggttcgtccggacgta
gtggcggaaatagccttcgtcgaatttaccagcgacaatgtcgtgcgccacggcagcttc
cttggcctgcgtgaagacaagcaggcgggcgaggtcaccagggagcaagtaatgacaaca
cccccaagtgagagcgatgtccatgtgtccaaccgtgaccggctcattttcccggaagca
aaggtcaccaaaggccagttggctgattattatgaagctgctggcgcaatcatgctgccg
tggatcgcccatcgtccgatcagcctggtccgctgtccgcagggccgagctaagaaatgc
ttcttccaaaagcatgacagcggcagctttggcgatcatgtgaagcacgtcccgatccgc
gagaaggacggggacgagcaggattatctctatgtcgatgacatagacgggctggtggcc
tgcgtgcagatgggaacgatcgagttccatggctggggttcgcgggtggaggatgtggag
aagcccgaccgcctgatcttcgacttggacccggacgaaggtctggactttgaagatgtg
aaaaaggcggcgcgcgatattcgtcgcaccctagaggatatcgggctgatcagcttcccg
atgttgtcaggcggaaaaggcgtgcatgtcgtcgtgccgttgacgcccgaggcggaatgg
cctgccgtcaaggatttcgccgatcgttttgccagggcgctcgcggccgctgagcctgat
cgatttactgccaccatgagcaaggcgaagcgcaaggggcgcatcttcattgactggctg
cgcaaccagcgtggagccactgccgtgctgccctatgtcgtccgtgctagggaaaatgcg
cccgtggcggcgcccgtcacctgggatgaattggacgatatcgagcgcgccggatcttac
accattgccgatgtggatcagttggtcgagcgggcggggtcgcggcaattgcggggatgg
ggcgaggcgcgccagacgctgccggactattga
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