KEGG   Sphingobium sp. EP60837: EP837_02376
Entry
EP837_02376       CDS       T04432                                 
Name
(GenBank) Ribonuclease J2
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sphb  Sphingobium sp. EP60837
Pathway
sphb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EP837_02376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphb03019]
    EP837_02376
Messenger RNA biogenesis [BR:sphb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EP837_02376
SSDB
Motif
Pfam: RMMBL RNase_J_C Lactamase_B Lactamase_B_2
Other DBs
NCBI-ProteinID: ANI78775
UniProt: A0A173KZR4
LinkDB
Position
1:2420820..2422457
AA seq 545 aa
MTPGNELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGLTFADPAYPGVELILPDLAFIEE
RKNDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLKLEEEGLTQEVELNVI
ENEGSFALGPFGFRYVPLAHSIPEGNAVLIETPYGRIFHTGDWKLDEQPLLGQPSTPEEL
SAIGDEGVLALVCDSTNVFNAEASGSEGDVREGLMQAVAGAKGRVLVTTFASNAARLQTL
GEVANAMGRKLCVAGRSLDRIIATARTAGYLKDFPPTIDWDDVMALPHNEVMIIATGGQG
EARAALSRIAFDSHPIKLDEGDMVVFSSKQIPGNEIAIGRIQNALAAKGVLMVTDRQAEV
HVSGHPGRPELEAMYRWVRPQILLPVHGERRHMAEQARLGLATGVPHAVVQSNGDLLRLA
PNGPEIIGHETTGRLVLDGDVILPADGSTMNERRKVALHGQISVAVALDRKGKLIGDPAL
RTQGVPVEEDKDAFLAEAADEAAKAVPKGSQDEEALRERVRLAVRRTATRWTGKKPVVDV
LLIRA
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgacacctggaaatgagctgctcttcctggccctcggtgggtcgggcgagatcggcatg
aatgtcaatctctacggctgccaaggcaaatgggtgatggtcgatctgggcctcaccttt
gctgacccggcctatcccggtgtcgaactgatattgccggaccttgcctttatcgaggag
cgaaagaacgacctgctcggcatcgtgctgacccacgggcatgaggatcatatcggggcg
atcccttatttggccgccgatctcggcgtcccgctctatgcgacgccgtttaccgcgggg
ttgatccggctcaagctggaggaagaggggctgacccaagaggtcgagctgaacgtgatc
gagaatgagggcagctttgcgctcggtccgttcggcttccgctatgtgccgctagcgcat
tcgattcccgagggtaatgccgtgctgatcgagaccccttatgggcggatttttcacact
ggcgactggaagctggatgaacagccgctgcttggtcagccatcgacgcccgaggaactg
tcggcgatcggcgatgagggcgtgctggcgctggtgtgtgacagcaccaatgtcttcaat
gccgaggcgagcgggtcggaaggcgacgtccgcgaagggctgatgcaggcggtcgcaggt
gcgaaggggcgggtgctggtcaccaccttcgcttccaatgctgcgcggctgcagacgctg
ggcgaggttgcaaacgccatgggacgcaagctctgcgtggcgggacggtcgctagaccgg
atcatcgcgactgcgcgcaccgcgggctatctcaaggattttccaccgacgatcgattgg
gacgacgtcatggcgctgccgcataatgaggtgatgatcattgccacgggtgggcaggga
gaagcgcgtgcggctttgtcgcggatcgccttcgacagccatcccatcaagttggacgaa
ggcgatatggtcgtgttttcgtccaagcagatcccgggcaatgagatcgcgatcgggcgc
attcaaaatgcgctggcggccaagggcgtgctgatggtgacggaccgccaggccgaagtg
catgtctcgggccatccgggccgtccggagttggaggccatgtatcgctgggtacggccg
cagatactgctccccgtgcatggtgagcggcggcatatggctgaacaggcgcggctgggc
ctggcgacgggcgtgccgcatgcggtggtccagtccaatggcgacctgctgcgattggcg
cccaatggcccggagattattggccatgagacgaccggcaggctggtgctggacggcgac
gtgatcctgcctgcggacggttccaccatgaacgagcggcgcaaggtggcgctgcatggt
cagatcagcgtggctgttgcgttggatcggaagggtaagctgatcggtgaccccgctttg
cgcacccagggagtgccggtggaagaggataaggacgcgttcctggccgaggcggctgat
gaagcggcgaaggctgttcccaagggctcgcaggacgaagaagcgctgcgcgagcgggtg
cggctggcggtgcgccgcacggcgacccgttggaccggcaaaaagccggtggtggacgtt
ctgctcattcgcgcttaa

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