Sphingobium sp. EP60837: EP837_02376
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Entry
EP837_02376 CDS
T04432
Name
(GenBank) Ribonuclease J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP837_02376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphb03019
]
EP837_02376
Messenger RNA biogenesis [BR:
sphb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EP837_02376
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GFIT
Motif
Pfam:
RMMBL
RNase_J_C
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ANI78775
UniProt:
A0A173KZR4
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Position
1:2420820..2422457
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AA seq
545 aa
AA seq
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MTPGNELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGLTFADPAYPGVELILPDLAFIEE
RKNDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLKLEEEGLTQEVELNVI
ENEGSFALGPFGFRYVPLAHSIPEGNAVLIETPYGRIFHTGDWKLDEQPLLGQPSTPEEL
SAIGDEGVLALVCDSTNVFNAEASGSEGDVREGLMQAVAGAKGRVLVTTFASNAARLQTL
GEVANAMGRKLCVAGRSLDRIIATARTAGYLKDFPPTIDWDDVMALPHNEVMIIATGGQG
EARAALSRIAFDSHPIKLDEGDMVVFSSKQIPGNEIAIGRIQNALAAKGVLMVTDRQAEV
HVSGHPGRPELEAMYRWVRPQILLPVHGERRHMAEQARLGLATGVPHAVVQSNGDLLRLA
PNGPEIIGHETTGRLVLDGDVILPADGSTMNERRKVALHGQISVAVALDRKGKLIGDPAL
RTQGVPVEEDKDAFLAEAADEAAKAVPKGSQDEEALRERVRLAVRRTATRWTGKKPVVDV
LLIRA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgacacctggaaatgagctgctcttcctggccctcggtgggtcgggcgagatcggcatg
aatgtcaatctctacggctgccaaggcaaatgggtgatggtcgatctgggcctcaccttt
gctgacccggcctatcccggtgtcgaactgatattgccggaccttgcctttatcgaggag
cgaaagaacgacctgctcggcatcgtgctgacccacgggcatgaggatcatatcggggcg
atcccttatttggccgccgatctcggcgtcccgctctatgcgacgccgtttaccgcgggg
ttgatccggctcaagctggaggaagaggggctgacccaagaggtcgagctgaacgtgatc
gagaatgagggcagctttgcgctcggtccgttcggcttccgctatgtgccgctagcgcat
tcgattcccgagggtaatgccgtgctgatcgagaccccttatgggcggatttttcacact
ggcgactggaagctggatgaacagccgctgcttggtcagccatcgacgcccgaggaactg
tcggcgatcggcgatgagggcgtgctggcgctggtgtgtgacagcaccaatgtcttcaat
gccgaggcgagcgggtcggaaggcgacgtccgcgaagggctgatgcaggcggtcgcaggt
gcgaaggggcgggtgctggtcaccaccttcgcttccaatgctgcgcggctgcagacgctg
ggcgaggttgcaaacgccatgggacgcaagctctgcgtggcgggacggtcgctagaccgg
atcatcgcgactgcgcgcaccgcgggctatctcaaggattttccaccgacgatcgattgg
gacgacgtcatggcgctgccgcataatgaggtgatgatcattgccacgggtgggcaggga
gaagcgcgtgcggctttgtcgcggatcgccttcgacagccatcccatcaagttggacgaa
ggcgatatggtcgtgttttcgtccaagcagatcccgggcaatgagatcgcgatcgggcgc
attcaaaatgcgctggcggccaagggcgtgctgatggtgacggaccgccaggccgaagtg
catgtctcgggccatccgggccgtccggagttggaggccatgtatcgctgggtacggccg
cagatactgctccccgtgcatggtgagcggcggcatatggctgaacaggcgcggctgggc
ctggcgacgggcgtgccgcatgcggtggtccagtccaatggcgacctgctgcgattggcg
cccaatggcccggagattattggccatgagacgaccggcaggctggtgctggacggcgac
gtgatcctgcctgcggacggttccaccatgaacgagcggcgcaaggtggcgctgcatggt
cagatcagcgtggctgttgcgttggatcggaagggtaagctgatcggtgaccccgctttg
cgcacccagggagtgccggtggaagaggataaggacgcgttcctggccgaggcggctgat
gaagcggcgaaggctgttcccaagggctcgcaggacgaagaagcgctgcgcgagcgggtg
cggctggcggtgcgccgcacggcgacccgttggaccggcaaaaagccggtggtggacgtt
ctgctcattcgcgcttaa
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