Sphingomonas psychrotolerans: CVN68_06445
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Entry
CVN68_06445 CDS
T05307
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphc
Sphingomonas psychrotolerans
Pathway
sphc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVN68_06445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphc03400
]
CVN68_06445 (mfd)
Enzymes [BR:
sphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVN68_06445 (mfd)
DNA repair and recombination proteins [BR:
sphc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVN68_06445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATY31654
UniProt:
A0A2K8MFA9
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All DBs
Position
1450235..1453693
Genome browser
AA seq
1152 aa
AA seq
DB search
MPDLNKILTATRPLTLSGTPTGFLPWMLADLARAGNMAVFVASDEAAMRTIASTAHYFAP
ELDILSYPAWDCLPYDRASPTLRVMSERLATLHALQIKSEKPRLLVTTVNAASQRTLTPF
RIRQLVARLAPGERIGLDKLATLLQANGYVRVDTVHDAGEFAVRGGLVDLFPSGAEQALR
LDFFGDEIESLRTFSPEDQRTTGRVDGFVLLPASEALLDEESIKRFRGRYREKFGANATG
DPLYQAISDGRRLAGMEHWLPMFEERLDTLFAHLPDDAVIVRDSATAGAAEQRFEAIADY
QQNRVRAESTAPGSYRPLAADTLYLSADEWAKALDHGPVHIATPFHEPESATVLDFEVDG
PRDFAPERAAGTNVYEAVVAHLAKVRRDGKKPILASYSVGARERLSGLLADHGLKGARNA
DGWQEALGTADKGIALIVLPLDHGFTAPNVAVLTEQDMLGDRLVRRSKRRKNTDAFLQEL
ATLSPGDLVVHIEHGIGRYEGLTQIPVQKAPHDCVALSYAGGDKLYVPVENLEVLSRYGS
GEEGATLDRLGGEAWQRRKSKMKERIREIAGDLIATAAKRATRPAEIAEPDHGGYAAFVD
RFPYEETDDQDRAINDVLGDLAAGRPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVAVV
CPTTLLARQHHRNFVERFQGFPIEIGRLSRLVPAAEAKAVKEGLTEGKIDIVIGTHAILS
KSIDIKRLGLVIVDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPVDRLAVRTYVIPWDPVVLREALLREHYRGGQAYFVTPRISDLPDIEAFLRNDVPE
ISYVVAHGQMAPTEVEERMSAFYDRRYDLLISTTIIESGLDIPSANTLIVNRADKFGLAQ
LYQIRGRVGRAKTRAYAYLTTPPERQMTEAADKRLKVLSDLESLGAGFQLAAHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAGGLRDDIRPKDLSPSITVDAPIMIPED
YVPDLDLRMGLYRRLNDVEDTRGIEEFAAELIDRFGKLPEPTENLLRLIEAKLNAKTACI
AKIDVGPKGALVTFYDDKFPNVPGLLAYVDKLGGTARLRPDMKLVINRAWADPKARLHGA
LQLSRGLAKAAG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctcaacaagatcctcaccgccacccggcccctcaccctttcgggcaccccg
accggcttccttccctggatgttggccgacctcgcccgtgccgggaacatggcggtgttc
gtcgcctcggacgaagcggcgatgcgcacgatcgcctcgaccgcgcattatttcgccccc
gagctcgacatcctcagctatccggcgtgggattgcctgccttatgaccgcgccagcccg
acgctgcgcgtcatgtccgaacggctcgccacgctccacgcgcttcagatcaagtccgag
aagccccgcctgctcgtcaccaccgtcaacgccgcgagccagcgcaccctcacgcccttc
cgcatccgccagctcgtcgcccgccttgctcccggcgagcgcatcggcctcgacaagctc
gcgacgctgcttcaggcgaacggctatgtccgcgtcgacacggtgcacgacgccggcgaa
ttcgccgttcggggcggtctggtcgacctcttccccagcggcgccgaacaggccctgcgt
ctcgatttcttcggcgacgagatcgagagcctgcgcaccttctcgcccgaggatcagcgc
actaccggtcgcgtcgacggcttcgtcctgctgcccgcctccgaagccttgctcgacgag
gagtcgatcaagcgtttccgcggccgctatcgcgagaagttcggcgccaacgccaccggt
gatccgctctatcaggcgatcagcgacggccgccgcctcgccggcatggagcattggctc
ccgatgttcgaggagcgcctcgacaccttgttcgcgcatctgcccgacgacgcagtgatc
gtccgcgactcggccaccgccggtgccgccgaacaacgcttcgaagcgatcgccgactat
cagcagaaccgcgtccgcgccgagtcgaccgcccccggcagctatcgcccgctcgccgcc
gacacgctctatctgtctgccgacgagtgggccaaggcgcttgaccatgggccggtgcat
atcgccacgcccttccatgagcctgaaagcgccaccgtcctcgacttcgaggtcgatggt
ccgcgcgatttcgcccccgagcgcgccgccggcaccaatgtctacgaagctgtcgtagct
cacctcgccaaagtacggagagacgggaagaaaccgatcctcgccagctattcggtcggc
gcccgcgagcgcctctctggcctgctcgcggaccacggcctcaagggtgcccgcaacgcc
gatggctggcaggaagcgctcggcaccgcggacaagggcatcgccctcattgttctgccg
ctcgatcatggcttcactgcaccaaacgtcgcggtgctcaccgagcaggacatgctcggc
gaccgtctcgtccgccgcagcaagcggcgaaaaaataccgatgccttccttcaggagctc
gccacgctctcgccgggcgacctcgtcgtccatatcgagcatggcatcggccgctacgag
ggcctcacccagatcccggtgcaaaaggcgccgcacgattgcgtcgcgctctcctatgcc
ggcggcgacaagctctacgttccggtcgaaaatctcgaagtgctgagccgctacggctcg
ggcgaggaaggcgcgacgctcgatcggctcggcggcgaggcatggcagcgccgcaagtcg
aagatgaaggagcgaatccgcgagattgcgggcgacctcatcgccactgccgccaagcgc
gccacccgccccgccgaaatcgccgagcccgatcatggcggctacgccgcattcgtcgat
cgcttcccttacgaggagaccgacgaccaggaccgcgcgatcaacgacgtgctcggggat
cttgccgcgggccggccgatggaccgcctcatcgtcggcgatgtcggcttcggcaagacc
gaggtcgcgcttcgcgccgccttcgtcgccgcgatggcggggatgcaggtcgccgtggtc
tgcccgaccactttgctcgcccgccagcaccatcgcaatttcgtcgagcgcttccagggc
ttcccgatcgagatcggccgcctgtcgcgcctggtgcccgccgccgaggccaaggcagtc
aaggaaggcctgaccgagggcaagatcgacatcgtcatcggcacccacgcgatcctgtcc
aagtcgatcgacatcaagcgcctcggcctcgtcatcgtcgacgaggagcagcgcttcggc
gtgacccacaaggagcgcctgaaggcgatgaaggcggacgtccacgtcctcaccctcacc
gccaccccgatcccgcgcacgctgcagatggcgatgtcgggcctgcgcgagctttcggtg
atccagaccccaccggtcgatcgcctcgcagtgcgcacctatgtcattccttgggatccg
gtcgtgctgcgcgaggcattgctgcgcgagcattatcgcggcggccaggcctatttcgtc
acgccgcgcatctcggacctccccgatatcgaggcgttcctgcgcaacgacgtccccgag
atcagctatgtcgtcgcgcacggccagatggccccgaccgaagtcgaggagcgcatgtcg
gccttttacgatcgccgctacgatttgctcatctcgaccacgatcatcgaatccggcctc
gacatcccgtcggcgaacacgctgatcgtcaaccgcgccgacaagttcgggctcgcgcag
ctctaccagatccgcggtcgcgtcggacgcgccaagacacgcgcttatgcctatctgacg
actccgcccgagcgccaaatgaccgaggcggccgacaagcgcctcaaggtgctgtccgat
ctcgaatcgctcggcgccggtttccagctcgcggcccacgatctcgacatccgcggtgcc
ggcaatctgctcggcgacgagcaatcgggccacatcaaggaagtcggctacgaactctac
cagtcaatgctcgaagaggcgatcatggacgccaaggccggcgggctgcgcgacgacatc
cgccccaaggacctgtcgccgtcgatcaccgtcgacgcgccgatcatgatccccgaggac
tatgtccccgatctcgatctgcgcatggggctctatcgccgcctcaacgatgtcgaggac
acccgcgggatcgaggagttcgccgccgagttgatcgatcgcttcggcaaattgcccgag
ccgaccgagaatttgctccggctgatcgaggccaagctcaacgccaagacggcgtgcatc
gccaagatcgacgtcggccccaagggcgcgctcgtcaccttctacgacgacaaattcccc
aatgtccccgggctgctcgcttatgtcgacaagctgggcggcaccgccaggctgcgcccc
gacatgaagctggtcatcaaccgcgcctgggctgaccccaaggcccggctccacggcgcg
ctgcagctttcgcgcgggctcgccaaggcggcgggataa
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