Sphingomonas psychrotolerans: CVN68_12350
Help
Entry
CVN68_12350 CDS
T05307
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphc
Sphingomonas psychrotolerans
Pathway
sphc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CVN68_12350 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphc03400
]
CVN68_12350 (ligD)
Enzymes [BR:
sphc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CVN68_12350 (ligD)
DNA repair and recombination proteins [BR:
sphc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CVN68_12350 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATY32668
UniProt:
A0A2K8MFK8
LinkDB
All DBs
Position
complement(2736868..2739333)
Genome browser
AA seq
821 aa
AA seq
DB search
MAAKSDPLEKYNAKRDFALTAEPAGKIVRTGGNRFMVQKHDASRLHWDFRIEVDGVLKSW
AVTRGPSLDPDEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPIEGKSAS
DLEKGHLHFRLEGERMKGEWLLIRLKPRGKEKSENWLLRKISDKHAGATDFLVETGLTSI
KTGRTMQEIAEGKKVEKRPAKASPQTTARVARHAAPAKAKLPKFQHPQLATLVDSVPTGN
QWLHEVKYDGYRALIATGAKGPKIYTRSGLDWTDKFPGIAEAARGLPAPALIDGEIIAYK
DGKPDFSTLQEAISAGGQDLTFFAFDLLADREDTTRLPQLARKEKLRALLEGADARIQFS
EHIVGAGEELFETMCREGYEGIVSKRADAPYRGTRTKSWLKVKCIRRQEFVIVGWTPSDA
KGRSFRSLLLAVNGPDGLVYAGKVGTGFNQARLQDLRDRFDRIAVDQAPVKVPRPEARGA
RWIEPKLVAEVAFSEFTAENVIRHASFIALREDKKPGEIVAEKPAPLSENSAAPQSSIKI
SSRDRVIYPESGLTKGELADYYAAVAPIALRWLGNRPISLVRCPQGRAKHCFFQKHDAGS
FGDNVHHVDVREKDGSVQPYLYVDDLDGIMACVQMGTIEFHGWGAPVTDIEKPDRLVFDL
DPDEGLDFAMVKKAAEDLKVHLADIGLTSWPLLSGGKGVHVVVPLIPQADWPVVRSFAER
FARALAQAEPERFTANLKKLNRKGKIFIDYLRNQRGATAVLPYVARARENAPVAAPVTWS
ELRDLEDAKRYTIRDAAILLERATSRALQGWGEAGQALPDL
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaagtccgaccccctcgaaaaatacaatgccaagcgcgactttgccctgacc
gccgagcccgccggcaagatcgtgcgcaccggcggcaatcgcttcatggttcagaagcac
gacgcgagccggctccattgggatttccgtatcgaggtggacggcgtgctcaagagctgg
gcggtcacgcgcggccccagtctcgacccggacgagaagcgcctcgccgttcgcaccgag
gatcatccgctgtcctatgccgatttcgaaggcacgatccccaagggccaatatggcggc
ggcacggtgatgctgtgggacgacggcgtctgggaaccgatcgaaggcaagagcgccagc
gacctcgaaaagggccacctccatttccgcctcgaaggcgagcggatgaagggcgagtgg
ctgctcatccgattgaagccgcgtggcaaggagaagagcgagaactggctgcttcgcaag
atcagcgacaaacatgccggcgccaccgattttctcgtcgaaacggggctgaccagcatc
aagaccggccggaccatgcaggagatcgccgagggcaagaaggtcgagaagcggcccgca
aaggcatcgccgcaaactaccgcgcgcgtcgccaggcatgccgcgccggcgaaggccaaa
ttgcccaaattccagcacccccagctcgccaccctcgtcgacagcgtcccgaccggcaat
caatggctccacgaagtcaaatatgacggctatcgcgcgctgattgccaccggcgccaag
ggccccaaaatctacacccgctcgggcctcgactggaccgacaaattccccggcatcgcc
gaggcagcgcgcggcctgcccgcccccgccctgatcgacggcgagatcattgcctataag
gacggcaagcccgatttctcgacgctgcaggaggcgatctccgcgggcggacaggacctc
accttcttcgccttcgacttgctcgccgatcgcgaggataccaccaggcttccccagctc
gcccgcaaggaaaagctgcgtgcgctgctagaaggcgccgacgcgcgcatacaattttcc
gaacacatcgtcggcgccggcgaggaattgttcgagacgatgtgccgcgaaggttatgaa
gggattgtctccaagcgcgccgacgcgccctatcgcggcacccgcaccaaatcctggctc
aaggtcaaatgcatccgccgccaggagttcgtcatcgtcggctggacgccaagcgatgcc
aaaggccgcagcttccgctcgctcctgctcgccgtcaatgggcccgacggcctggtctat
gccggcaaggtgggaacgggcttcaatcaggcgaggctccaggatcttcgcgatcgcttc
gacaggatcgccgtggatcaggcccccgtgaaagtcccccgtcccgaggcgcgtggtgcg
cggtggatcgagccgaaactcgtcgccgaagtcgccttcagcgaattcactgccgagaac
gtcatccgccacgccagcttcattgcattgcgcgaggacaagaagcccggcgagatcgtc
gccgagaagccggcgccgctttccgaaaactccgcagccccgcaatccagcatcaagatc
agcagccgcgatcgggtgatctaccccgaatcggggctcaccaagggtgagctcgccgat
tattacgcggcagtcgcgccgatcgcgttgcgctggctcggcaaccgcccgatcagcctc
gtccgctgcccgcaggggcgcgccaagcactgcttcttccagaagcacgacgccggcagc
ttcggcgacaatgtccaccatgtcgacgtccgcgagaaggacggcagcgtgcagccctat
ctctatgtcgacgatctcgacgggatcatggcctgcgtgcagatgggcacgatcgagttc
cacggctggggtgccccggtcaccgatatcgagaaacccgaccggctggtgttcgatctc
gatcccgacgaggggctcgatttcgccatggtcaagaaagcggccgaggatttgaaagtc
catctcgccgatatcggcctgaccagctggccgctgctatcgggcggcaagggggtgcac
gtcgtggtgccgctgatcccgcaggccgattggcccgtggtgcgcagcttcgccgagcgc
ttcgcccgcgcgctcgcccaggccgagccggaacgcttcaccgccaatctcaagaagctc
aaccgcaagggcaagattttcatcgactatctgcgcaaccagcgcggcgcgactgcggtc
ctcccttatgtcgcccgcgcccgcgagaatgcgccggtcgccgcgccggtcacctggagc
gagctgcgcgacctcgaggatgccaagcgctatacgatccgcgacgctgccatcttgctc
gagcgcgccaccagccgcgcgctgcagggttggggggaagccgggcaggcattgcccgac
ctctag
DBGET
integrated database retrieval system