Sphingobacterium sp. dk4302: GFH32_00355
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Entry
GFH32_00355 CDS
T06292
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphe
Sphingobacterium sp. dk4302
Pathway
sphe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GFH32_00355 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphe03400
]
GFH32_00355 (ligD)
Enzymes [BR:
sphe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GFH32_00355 (ligD)
DNA repair and recombination proteins [BR:
sphe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GFH32_00355 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Sda
Motif
Other DBs
NCBI-ProteinID:
QGA24869
UniProt:
A0A5Q0Q6Z1
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All DBs
Position
69512..71938
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AA seq
808 aa
AA seq
DB search
MVKLTTYNKKRDFENTDEPKGAPSVSKRKSAHKLRFVVQRHHASRLHYDFRLELDGVLKS
WAVPKGPSLYPKDKRLAMQVEDHPIDYASFEGSIPKGNYGAGTVHIFDSGYYEFSEAKDE
AEFLKNWRKGSLKFKLFGHILRGEFALVQMKGDEGKAWLLIKHQDRYATDAPYNSEDCIA
DSIKEAGIVFKEQPPPKPMLTKLVDKLPTGGDWVYEKKYDGFRIIGVRSSQAVHLYSRSG
KSMNHLFPSIVQELAALDKEVCVDGELLIEDMEGRSHFQLIASGEPVPSTLHLRYYVFDI
LRLENEVLNEYTLVQRKELLRLLLKRLKKIKFIKPVEELQGDIDTLRQKAEQQNWEGIIA
KEKESRYLEGIRNAQWVKYKLRHSQEAIICGYTTPQGNRSHFGALVLGMYKEGVLTYIGN
CGTGFDEALLESTYKRMKRIVSDKKPFPKAIHVAKEKDVTWLSPELICEVYYSEWTSDKH
LRHPVFKMLRTDKKPREIESEELLPMENKDESITIGNKTVQLTNLDKVYWPQDNYIKGQM
IAYYEEMADHMLPYLKDKPISLHRFPNGIDADSFFQKDVDPDKIPDWVKTVPIHAESTGK
DIDYIICNDKATLLYIANLGSIEINPWLATYKNPENPDFAVLDLDPNGADFEEVIRVAKL
AKEFLDKMGASSFVKTSGSTGMHIYLYVAKKYDYDIVRDFIQLLAEMLHERCLETTSIVR
DPKKRKGMIYLDFLQNRRGQTIASPYSLRPKEGATVSAPLDWSEVRPGLDIKSFTIKSML
KRVKEIKDPWAGIWSSPVDIKKSLKRLG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggttaagcttacgacatacaataagaaacgggatttcgagaatacagatgaaccgaag
ggagccccttctgtctctaaaagaaaaagtgcacataaactacgatttgtggtacagcgt
catcatgcatcgaggctacactatgattttcgacttgaattggatggtgtattaaagagt
tgggcggttcctaaggggccatctctgtatcccaaagacaaacgattggctatgcaggtc
gaagaccatccgatagattatgcttcatttgagggaagcatacctaaaggtaattatggc
gcaggtacggttcatatttttgattcaggctattacgagttttcagaggcaaaggatgaa
gccgaatttttgaaaaactggcgaaagggatctttgaaatttaaactttttggccacatt
ttacgtggagaatttgcattggtacagatgaaaggcgatgaaggcaaggcttggctgcta
atcaaacatcaggatagatacgctaccgatgctccatacaatagcgaagattgtatagcg
gatagtattaaagaggccggtatcgtttttaaggagcaacctccacccaaacctatgctc
accaagcttgtcgataagctcccaaccggaggtgattgggtatatgaaaagaaatatgac
ggtttccggataatcggggtacgaagttcgcaagcagtacacctgtattctcgtagtgga
aaaagtatgaatcatttatttccttccattgttcaggagctagctgcactggataaggaa
gtgtgtgtagatggcgagctactgatcgaagacatggagggacgctcacactttcaactt
atagccagtggcgagcctgtacccagcacgctgcatctccgctactacgtattcgatatt
ctacgtctggaaaatgaggtgcttaacgaatacaccttggtacagcgtaaagaactactg
agattacttcttaaacgtttgaagaaaattaaatttatcaagcctgtcgaggagttgcaa
ggggatatagatacattacggcaaaaagcggaacaacaaaactgggaaggaattattgct
aaagaaaaggaaagtcgctatctcgaaggcatacgtaatgcacagtgggtgaagtataaa
ttgagacatagccaagaggcgattatctgtggatacaccacaccgcaaggtaacagatcg
cattttggtgcactcgttttaggaatgtataaagaaggcgtattgacatatattggtaat
tgcgggacaggatttgacgaagcgttattagaatccacctataagcggatgaaaaggata
gtaagcgataaaaagcccttcccaaaagcgatacacgtggcaaaagagaaggacgtgacc
tggttgagccccgaacttatctgtgaggtctattattccgaatggacatcggataaacat
ttacgccatcccgtatttaagatgttacgtacggataagaaacctcgagaaattgaatca
gaagaattattacctatggaaaataaagacgaaagtattactattgggaataaaacggta
cagcttacgaatctagataaggtgtactggccacaggacaattatataaaaggccagatg
attgcttattacgaggaaatggcagatcatatgttaccttatctgaaagataaaccaatc
tcattgcaccgctttccaaacgggatcgatgccgatagtttctttcaaaaagacgtagac
ccggataaaattccagattgggtaaaaacagtaccaattcatgccgagagcacaggcaag
gatattgattatattatttgcaacgacaaggcgaccttattatacatcgcgaatctgggg
tctatcgaaataaatccctggctcgcaacttacaaaaatccagagaatccagattttgca
gtattggatttagatcccaacggagccgattttgaggaagtgatccgagttgcaaaactc
gccaaggaattcctggacaaaatgggggcatcttcctttgtgaaaacatcgggatctaca
ggtatgcacatttatctttacgttgctaaaaagtatgattacgatatcgtacgcgatttt
attcaattgttggcggagatgctgcacgagaggtgtttagaaacaaccagcattgtaagg
gatcccaaaaaacgtaagggaatgatttatttggactttttgcagaatagaagagggcag
acgattgcttctccctattccttaagacccaaggaaggcgctacggtcagtgcaccactt
gattggagcgaggtacgacctggacttgatatcaaaagctttacgattaagagtatgtta
aagcgagtgaaagaaatcaaagacccatgggcaggcatttggagtagccccgtagatatt
aaaaaatccctgaagcgactaggctag
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