KEGG   Sphingobacterium sp. dk4302: GFH32_00355
Entry
GFH32_00355       CDS       T06292                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphe  Sphingobacterium sp. dk4302
Pathway
sphe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GFH32_00355 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphe03400]
    GFH32_00355 (ligD)
Enzymes [BR:sphe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GFH32_00355 (ligD)
DNA repair and recombination proteins [BR:sphe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GFH32_00355 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme Sda
Other DBs
NCBI-ProteinID: QGA24869
UniProt: A0A5Q0Q6Z1
LinkDB
Position
69512..71938
AA seq 808 aa
MVKLTTYNKKRDFENTDEPKGAPSVSKRKSAHKLRFVVQRHHASRLHYDFRLELDGVLKS
WAVPKGPSLYPKDKRLAMQVEDHPIDYASFEGSIPKGNYGAGTVHIFDSGYYEFSEAKDE
AEFLKNWRKGSLKFKLFGHILRGEFALVQMKGDEGKAWLLIKHQDRYATDAPYNSEDCIA
DSIKEAGIVFKEQPPPKPMLTKLVDKLPTGGDWVYEKKYDGFRIIGVRSSQAVHLYSRSG
KSMNHLFPSIVQELAALDKEVCVDGELLIEDMEGRSHFQLIASGEPVPSTLHLRYYVFDI
LRLENEVLNEYTLVQRKELLRLLLKRLKKIKFIKPVEELQGDIDTLRQKAEQQNWEGIIA
KEKESRYLEGIRNAQWVKYKLRHSQEAIICGYTTPQGNRSHFGALVLGMYKEGVLTYIGN
CGTGFDEALLESTYKRMKRIVSDKKPFPKAIHVAKEKDVTWLSPELICEVYYSEWTSDKH
LRHPVFKMLRTDKKPREIESEELLPMENKDESITIGNKTVQLTNLDKVYWPQDNYIKGQM
IAYYEEMADHMLPYLKDKPISLHRFPNGIDADSFFQKDVDPDKIPDWVKTVPIHAESTGK
DIDYIICNDKATLLYIANLGSIEINPWLATYKNPENPDFAVLDLDPNGADFEEVIRVAKL
AKEFLDKMGASSFVKTSGSTGMHIYLYVAKKYDYDIVRDFIQLLAEMLHERCLETTSIVR
DPKKRKGMIYLDFLQNRRGQTIASPYSLRPKEGATVSAPLDWSEVRPGLDIKSFTIKSML
KRVKEIKDPWAGIWSSPVDIKKSLKRLG
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggttaagcttacgacatacaataagaaacgggatttcgagaatacagatgaaccgaag
ggagccccttctgtctctaaaagaaaaagtgcacataaactacgatttgtggtacagcgt
catcatgcatcgaggctacactatgattttcgacttgaattggatggtgtattaaagagt
tgggcggttcctaaggggccatctctgtatcccaaagacaaacgattggctatgcaggtc
gaagaccatccgatagattatgcttcatttgagggaagcatacctaaaggtaattatggc
gcaggtacggttcatatttttgattcaggctattacgagttttcagaggcaaaggatgaa
gccgaatttttgaaaaactggcgaaagggatctttgaaatttaaactttttggccacatt
ttacgtggagaatttgcattggtacagatgaaaggcgatgaaggcaaggcttggctgcta
atcaaacatcaggatagatacgctaccgatgctccatacaatagcgaagattgtatagcg
gatagtattaaagaggccggtatcgtttttaaggagcaacctccacccaaacctatgctc
accaagcttgtcgataagctcccaaccggaggtgattgggtatatgaaaagaaatatgac
ggtttccggataatcggggtacgaagttcgcaagcagtacacctgtattctcgtagtgga
aaaagtatgaatcatttatttccttccattgttcaggagctagctgcactggataaggaa
gtgtgtgtagatggcgagctactgatcgaagacatggagggacgctcacactttcaactt
atagccagtggcgagcctgtacccagcacgctgcatctccgctactacgtattcgatatt
ctacgtctggaaaatgaggtgcttaacgaatacaccttggtacagcgtaaagaactactg
agattacttcttaaacgtttgaagaaaattaaatttatcaagcctgtcgaggagttgcaa
ggggatatagatacattacggcaaaaagcggaacaacaaaactgggaaggaattattgct
aaagaaaaggaaagtcgctatctcgaaggcatacgtaatgcacagtgggtgaagtataaa
ttgagacatagccaagaggcgattatctgtggatacaccacaccgcaaggtaacagatcg
cattttggtgcactcgttttaggaatgtataaagaaggcgtattgacatatattggtaat
tgcgggacaggatttgacgaagcgttattagaatccacctataagcggatgaaaaggata
gtaagcgataaaaagcccttcccaaaagcgatacacgtggcaaaagagaaggacgtgacc
tggttgagccccgaacttatctgtgaggtctattattccgaatggacatcggataaacat
ttacgccatcccgtatttaagatgttacgtacggataagaaacctcgagaaattgaatca
gaagaattattacctatggaaaataaagacgaaagtattactattgggaataaaacggta
cagcttacgaatctagataaggtgtactggccacaggacaattatataaaaggccagatg
attgcttattacgaggaaatggcagatcatatgttaccttatctgaaagataaaccaatc
tcattgcaccgctttccaaacgggatcgatgccgatagtttctttcaaaaagacgtagac
ccggataaaattccagattgggtaaaaacagtaccaattcatgccgagagcacaggcaag
gatattgattatattatttgcaacgacaaggcgaccttattatacatcgcgaatctgggg
tctatcgaaataaatccctggctcgcaacttacaaaaatccagagaatccagattttgca
gtattggatttagatcccaacggagccgattttgaggaagtgatccgagttgcaaaactc
gccaaggaattcctggacaaaatgggggcatcttcctttgtgaaaacatcgggatctaca
ggtatgcacatttatctttacgttgctaaaaagtatgattacgatatcgtacgcgatttt
attcaattgttggcggagatgctgcacgagaggtgtttagaaacaaccagcattgtaagg
gatcccaaaaaacgtaagggaatgatttatttggactttttgcagaatagaagagggcag
acgattgcttctccctattccttaagacccaaggaaggcgctacggtcagtgcaccactt
gattggagcgaggtacgacctggacttgatatcaaaagctttacgattaagagtatgtta
aagcgagtgaaagaaatcaaagacccatgggcaggcatttggagtagccccgtagatatt
aaaaaatccctgaagcgactaggctag

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