Sphingobacterium sp. dk4302: GFH32_11290
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Entry
GFH32_11290 CDS
T06292
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
sphe
Sphingobacterium sp. dk4302
Pathway
sphe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GFH32_11290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphe03021
]
GFH32_11290
Transcription machinery [BR:
sphe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GFH32_11290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
GerE
HTH_28
HTH_38
HTH_20
HTH_40
HTH_5
HTH_3
HTH_24
HTH_Tnp_ISL3
HTH_17
LacI
Sigma70_ECF
HTH_10
DUF2089
KORA
MerR
Motif
Other DBs
NCBI-ProteinID:
QGA26868
UniProt:
A0A5Q0QG63
LinkDB
All DBs
Position
complement(2646644..2647246)
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AA seq
200 aa
AA seq
DB search
MSNAAVIDVKLLLGELKAGSMPAFNSLYMYYSPQLYAHLLKFLKSPELVEEVLQEVFVKV
WNLREEIEPDRGFKTFIYTIASNLAINLIKKINRDKVLQSEIWASSISYYLHSEEKLINK
EKLEIIDRAIATLSPKRREILLFCKVEGKSYKEVADMLGISVSTVSNQLVNAVHDIRNFI
VKNYTEEYLVGVLIAIFIQF
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgctgctgtaattgacgttaaattactcttaggagagctgaaagcgggaagt
atgccggccttcaatagtctctatatgtattattccccgcaactgtatgctcatttactg
aagtttctaaaaagtcccgagttagtggaagaagtgttacaagaggtatttgttaaagtc
tggaatttacgcgaagagattgagcctgatcgcggatttaagacttttatatacacgatt
gcgagcaatttagccatcaaccttatcaaaaaaatcaatcgagataaggtcttgcaatct
gagatatgggcaagttccatttcctattatcttcactctgaagagaaactaatcaataag
gagaaattagagataattgatcgtgccattgcgacactgagccccaagcgtcgtgaaatc
ttattgttttgtaaagtagagggaaagagttacaaagaagtcgctgatatgctagggatt
tctgtttctacggtgagcaatcaattggtaaatgcagtccatgacattcgaaattttatc
gttaaaaattacacagaagagtatctcgtcggtgttttaatcgccattttcattcaattt
taa
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