Tardibacter chloracetimidivorans: BSL82_05400
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Entry
BSL82_05400 CDS
T04967
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphj
Tardibacter chloracetimidivorans
Pathway
sphj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSL82_05400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphj03400
]
BSL82_05400
Enzymes [BR:
sphj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSL82_05400
DNA repair and recombination proteins [BR:
sphj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSL82_05400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
API58810
UniProt:
A0A1L3ZT89
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Position
1050378..1052867
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AA seq
829 aa
AA seq
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MALEVYRQKRDFTKTAEPEGAAKPAKDSNAYLIQKHAARRLHYDLRLELDGVLLSWAVTR
GPSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVVLWDRGQWKPVGDAKKGLAKG
HLDFELFGEKLNGKWHLVRLKPKPREKADNWLLIKSDDDAARAEDDPDILEERPESVKTG
RTVDEIAGEAPGWSSKTGKIAPPPPKAAPAKLKGAVKATMPDFVPPMLATLVPKPPTGKK
WLHEIKLDGYRLQAHIAKGKVKLITRGGLDWTGRFGKAIAQALAALPVKEAVIDGELVVE
NDAGASDFSALQAELSAGRASRFVFYAFDLLHLDGHDLQGVPLLSRKAALQEIMSASDAA
VLRFSEHFEAEAAIVLRHACRLSLEGIISKQANGKYRNGRTKEWVKSKCSERQEFVVAGY
VPSTVSNKAIGSLVLGYHDAKGNLIHVGRVGTGYTVRAAEDLYRRLEKIRTSSSPFAKKL
SAEQARQVRYVKPELVAEVEFRGWTADRNLRHAAFRGLREDKPASDIVIETEVAPASTSR
QQRPKAVLTHPDRLYWPDAGVTKAGLADYYAEVWPHIAPYVTGRPLSLVRCPGGITEQCF
FQKRAWKGLSKSIRQTPDPKSSSKEPVLSIDNLEGLYGLVQAGVLEIHPWGSTLAAMEQP
DMIIMDLDPGPGVEWQQVIEAAQEVRERLEKLGLAAFLKTSGGKGLHVVSPLKPDAGWDV
VKPFTKRIADAMAADSPDRFVATVTKSKRKGKILVDYLRNGRGATAVAPFSTRSRPGAPV
SMPIGWDELGGEIGPAYFTVANALTRLAHQQSDPWADFRKSAVALPGKK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggaggtctatcggcagaaacgggatttcacgaaaaccgccgagcccgaaggc
gcggcgaaacccgccaaggacagcaacgcctatctgatccagaaacacgccgcgcgacgg
ctgcactacgatctacggcttgagctggacggtgtgctgctgagctgggcggtgacgcgc
gggccaagcctggtgcccggcgaaaagcggcttgccgttcatgtcgaggatcacccgctg
gaatatggcgactttgaaggcacgatccccaagggcgaatatggcggcggcaccgttgtt
ctgtgggatcgcggacagtggaagccggtgggagacgccaagaagggcctcgccaagggg
catctggatttcgagctgttcggcgaaaagctgaatggcaaatggcaccttgtccgactg
aagccaaagccgcgcgaaaaggccgacaactggctgctcatcaagagcgacgatgacgcc
gcccgggcggaggatgaccccgatatcctggaggaacggccggaatcggtgaagaccgga
cggacggtggacgaaatcgcgggtgaagcgccgggctggtcgtcaaagaccggcaagatc
gcgcccccgccgcccaaggccgctcccgccaagctcaagggcgcggtcaaggcgacgatg
cccgatttcgttccgccgatgcttgcaacgctggtgccgaagcctccgacgggcaagaaa
tggctccacgagatcaagctcgacggttaccggcttcaggcgcacatcgccaagggcaag
gtgaagctcatcacgcgcggcgggctggactggaccggccgcttcggcaaggcgatcgca
caggcgctggcggcgcttcctgtcaaggaagctgtgatcgacggcgaactggttgtcgaa
aatgacgcgggcgcgtcggacttttcagcgcttcaggcggagttgagcgccgggcgcgcc
agccgcttcgtgttctacgccttcgacctgctccacctggacggccatgacctgcaaggc
gttccccttctctcgcgcaaggccgcactccaggaaatcatgtcggcaagcgatgccgcc
gtcctgcgcttcagcgagcattttgaggccgaagcggcaatcgttctgcgccacgcctgc
cgcctgagcctggaaggcatcatctccaagcaggccaacggaaagtatcggaacgggcgg
acgaaggaatgggtgaaatcgaagtgttccgagcggcaggagttcgtcgtggcgggctat
gtgccgtccaccgtctccaacaaggcgatcggatcgctggtgcttggctatcatgacgcc
aagggcaatctgatccatgtcggccgcgtgggcaccggatacaccgtccgcgccgccgaa
gacctgtatcggcggctggagaagatcaggaccagttccagcccgttcgctaaaaagctg
tctgccgaacaggcgcggcaggtccgctatgtaaagcccgaactggtcgccgaggtggag
tttcgcggctggacggccgaccgcaacctgcgccacgcggcgtttcgcgggctgcgagag
gacaagcccgcatcggacatcgtgatcgagacggaagtcgcgcccgcaagcaccagcagg
cagcagcgccccaaggccgtgctcacccatcccgaccggctctactggcccgacgcggga
gtcaccaaggcgggtctcgcggactattacgccgaggtgtggccgcacatcgcgccctat
gtcaccggccgcccgctttcgctcgtccgctgtccgggcgggatcaccgaacaatgcttc
ttccagaagcgcgcctggaaagggctgagcaaaagcatcaggcagacgcccgacccaaag
tcatcgtcaaaggagccggtgctgagcatcgacaatctggaaggcctctacggtctggtt
caggcgggcgtgctggagatccatccctggggatcgacgcttgcagcgatggaacagccg
gacatgatcatcatggacctggaccccggccccggcgtcgaatggcaacaggtgatcgaa
gcggcgcaggaggtgcgcgagcggctggaaaagctgggtctcgccgccttcctcaagaca
tcgggcggcaagggactgcacgttgtgtccccgctgaagccggacgccggatgggatgtc
gtgaagccgttcacgaagcgcatcgccgatgcgatggccgccgacagccccgaccgcttt
gtcgcgacggtcaccaaatcgaagcgcaagggcaagatattggtcgattatctcaggaac
ggtcgcggcgcgacggcggttgcgcccttttccacccgatcgcggcccggcgcgcccgta
tctatgccgatcggctgggatgaactgggcggcgagatcggcccggcatatttcaccgtc
gccaatgcgctgacgcggctggcgcaccagcagagcgatccctgggccgattttcggaag
agcgcggtagctttgccggggaagaaatag
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