Sphingopyxis fribergensis: SKP52_15670
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Entry
SKP52_15670 CDS
T03542
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SKP52_15670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_15670
Enzymes [BR:
sphk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SKP52_15670
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SKP52_15670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJA10013
UniProt:
A0A0A7PL85
LinkDB
All DBs
Position
3347252..3350746
Genome browser
AA seq
1164 aa
AA seq
DB search
MTIPAADIFAAIGSAPTPLTLARAADGFLPLLLADLARASDKRLVYVATDDSAMQAIADA
APFFAPDLAVHRFPAWDCLPYDRAGPSMRVSADRLATLSALQLPPKRGELILTTVAAITQ
RTLTPFRIRQLATTLAAGQRIDRDALAELLVSNGFSRVDTVADQGEFAVRGGILDLFPAG
EETGLRVDFFGDEIESIRRFDPADQRSLGPAKALQLLPASETLLDEATIKRFRSAYRDLF
GGQSTGDPLYQAVSEGRRQAGMDHWLPLFEERLATLFDHIDPATPVLRGHRTEATAETRF
AAISDYHANRVAAERESPGSYRPLTPETLYLAEHEWAGASSDRPIHIVTPFDVPPSATVV
DLETFAARDFTPERTADLNVYDKVADHLSDERRKGRRTIIASYSGGARERLSGLLRDHGV
TSLAPADSWQEALGTASAESGGATAMVVLPLDHGFASDAISLLTEQDILGERLVRRQKRR
KSADAFLAELATLSVGDLVVHLDHGIGRYEGLTQIPVGSSPHDCVALTYAGGDKLYVPVE
NLDVLSRYGGESDGVALDRLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGELLAQ
DAAYPAFADRFPYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVALRAAFVAA
MAGVQVAVVVPTTLLARQHYTNFVERFKGFPVNIGRLSRLVPAGEAQKTREGLESGHIDI
VVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKTDVHVLTLTATPIPRTLQMA
MSGLRELSVIQTPPVDRLAVRTYVAPWDPVVLREALLREHDRGGQSFFVVPRIKDLPDIE
EFLRNRVPEIKYVVAHGQMTPTEVEDRMSAFYDRKYDVLLSTTIVESGLDIPSANTLIIH
RADRFGLAQLYQLRGRVGRSKTRAYAYLTTPEHGAITDTAEKRLKLLGDLDTLGAGFQLA
SHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGAGKLPPREALSPTITV
DAPILIPEDYVPDLPLRMALYRRLNDAEDRPALDAFAAEMIDRFGPLPPETANLVQLMEI
KANAKLAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARLRPDNKLSISGDWV
STGARLNGALQLSKGLGKLAKQVA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgacgattcccgccgccgacattttcgccgcgatcggatcggcgccgactccgctgacg
ctggcgcgcgcagccgacggcttcctgccgctgctcctcgccgacctggcgcgcgcaagc
gacaagcgcctcgtctatgtcgcgaccgacgatagcgcgatgcaggcgatcgccgacgcc
gcgcccttcttcgcccccgaccttgccgtccaccgctttccggcgtgggattgccttcct
tacgatcgcgccggaccgtcgatgcgcgtcagcgccgaccggcttgcgacgctctccgcg
ctgcaactgccgccgaaacggggcgaactgatcctgaccaccgtcgccgcgatcactcag
cgcacgctgacgcccttccgcatccgccagctcgccacgacgctcgcggcggggcagcgg
atcgaccgcgacgcgcttgccgaactgctcgtctcgaacggcttcagccgcgtcgacacc
gtcgccgatcagggcgagttcgcagtgcgcggcggtatcctcgatctcttccccgccggc
gaagaaacgggcctgcgcgtcgatttcttcggcgacgagatcgagagcatccgccgcttc
gaccccgccgaccaacgcagcctcggccccgccaaggcgttgcagcttctcccggcatcc
gagaccttgctcgacgaagcgacgatcaagcggttccgctcggcctatcgcgacctgttc
ggcggccagtcgacgggcgacccgctgtatcaggcagtgagtgagggccgacggcaggcg
ggcatggaccattggttgccgctgttcgaggaacgattggcaactttgttcgaccatatc
gatcccgcaactcccgtgctgcgcggccaccgcaccgaggcgaccgccgagacgcgtttc
gcagcaatcagcgactatcacgccaaccgcgttgccgccgaacgcgaatcgccgggcagc
tatcgcccgctgacgcccgagacgctctatttggccgaacacgaatgggccggagcctcg
tcggatcgcccaatccatatcgtcacccccttcgacgtgcccccaagcgcaacggtggtc
gacctcgaaaccttcgccgcgcgcgatttcacccccgagcgcactgccgacctcaacgtc
tatgacaaggttgccgaccatctgtcggacgagcggcgcaagggccggcgtacaatcatc
gccagctattcgggcggcgcgcgcgagcgcctgtcggggctgctgcgcgaccatggcgtc
acttcgctcgcccccgccgacagctggcaggaggcgctcggcaccgcctcggcggaaagc
ggcggcgcgaccgcgatggtcgtcctgccgctcgaccatggctttgcgagcgacgcgatc
agcctgcttaccgaacaagatatcctcggcgagcgtctcgtccggcggcagaagcgccgc
aagagcgccgatgcgtttctggcggaactcgcgacgctcagcgtcggcgaccttgttgtc
catctcgatcacggcatcgggcgatatgagggactgacccagatcccggtcgggagcagc
ccgcacgattgcgtcgcgctcacctacgccggcggcgacaagctgtacgtccccgtcgaa
aatctcgatgtcctctcgcgctatggcggcgagagcgacggcgtcgcgctcgatcggctc
ggcggcgaagcctggcagcgccgcaaggcgcggatgaaggagcgcatccgcgagatcgcg
ggcgagctgctcgcaaccgcggcgcagcgcgctttgcgctcgggcgaactactcgcgcag
gatgccgcctatcccgcgttcgccgaccgcttcccctatcaggaaactgacgatcaggac
cgcgcgatcggcgatgtgctcgccgacatggcatcgggccgcccgatggaccggctcgtt
tgcggcgacgtcgggttcggcaagaccgaggtcgcgctccgcgccgccttcgtcgcggcg
atggccggggtgcaggttgcggtggtcgtgccgacgactttgctcgcacgccagcattac
acgaatttcgtcgagcgtttcaaaggcttcccggtcaacatcggccgcctctctcgccta
gttccggcaggtgaagcgcaaaagacgcgcgaagggctcgaaagcggtcatatcgacatc
gtcgtcggcacccatgctgtgatcgcgaaatcggtcgagttcaagaatctcggcctcgtc
atcgtcgacgaagagcagcgtttcggggtcgtgcacaaggagcggctgaagcagctcaag
accgacgtccacgtcctgaccctcaccgcgacaccgatcccgcgcacgttgcagatggcg
atgtcgggcttgcgcgaactcagtgtcatccagacgccgccggtcgaccgcctcgcggtc
cgcacctatgtggcgccgtgggatcccgtggtgctccgcgaagccttgctgcgcgagcat
gaccgcggcggacagagcttcttcgtcgtgccgcggatcaaggatctgcccgacatcgag
gaattcttgcgcaaccgcgtgcccgaaatcaaatatgtcgtcgcgcatggccagatgacc
ccgaccgaggtcgaggaccggatgagcgccttctacgaccgcaaatatgacgtgctgctg
tcgacgacgatcgtcgaaagcgggctcgatatcccgagcgccaacacgctgatcatccac
cgcgccgaccgcttcggcctcgcacagctctatcagctgcgcgggcgcgtcggccgatcg
aagacgcgcgcctatgcctatctcacgacccccgagcatggcgcgatcaccgataccgcc
gaaaagcggctgaagctgctcggcgatctcgacacattgggcgcgggtttccagctggcg
agccacgacctcgacattcgcggcgcgggcaatctcgtcggcgacgagcagtcggggcat
atccgcgaagtcggtttcgaactttatcagtcgatgctcgaggaggcgattttagtggca
aaggccgagggtgctggaaagctgccgccgcgcgaagccttgtcgcccacgatcaccgtc
gacgcgccgatcctgatccccgaggattatgtccccgacctaccgctgcgcatggcgctc
tatcgccgcctcaacgacgccgaggatcgtccggcgctcgatgccttcgcggccgagatg
atcgaccgttttgggccgctgccgcccgaaaccgcgaaccttgtgcagctgatggagatc
aaggcaaacgcgaagctcgcggggatcgccaaactcgatgtcggcaccaagggcgcgctc
gtcagcttccacggcgaccagttcgccaatgtccccgggctgatcgcctatgtcgaacgg
ctgaagggccgcgcgcgccttcgccccgacaacaaattgtcgatcagcggcgactgggtg
agcacgggtgcgcgattgaacggcgcgctccagctatcgaagggattgggcaagctggcg
aagcaggtggcgtaa
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