Sphingobacterium sp. B29: BV902_20470
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Entry
BV902_20470 CDS
T04670
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BV902_20470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphn03400
]
BV902_20470
Enzymes [BR:
sphn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BV902_20470
DNA repair and recombination proteins [BR:
sphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BV902_20470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
APU98421
LinkDB
All DBs
Position
complement(4750406..4753144)
Genome browser
AA seq
912 aa
AA seq
DB search
MGLSKYREKRSAGKTPEPFGGRSSGKELRFVVQMHDASHLHYDFRLEMNGVLKSWAVPKG
PSMDPSIKRLAMMVEDHPYDYRNFEGIIPKGQYGGGSVIVWDEGRYEALAPESNDVVKMD
KNLRHQLYSGKLKFRLYGEKLKGEFALVKAYGRGGNEWLLMKLEDQYATSKDVIANDKSV
LSGKTIAEMEKSPDKVYGQPVVKKNSISKNKGKKSRNAAEIISNQLEEVPKKKKAETQKQ
AYNITDLLKKSPKQVFYTTVQPMLATLVDKSFDDQSWVYEVKWDGYRAVAFMKNGEIELK
SRNDKSFNEKFYPVYDTLKSIAINAILDGEIVVLEKNGTANFAALQNWRSEADGDLVYYV
FDILWYDGKDLKGLSLLERKAILKEVIPQNDLILLSEHFDTSGVGFLNEAKKLGLEGIMA
KRKESVYHIHERSPDWLKIKANRRQEVVIGGFTKNEGSSKLFSSLLVGLYEDKKLIYTGK
VGTGFSAKLQQELMAQFKPLVTKNSPFDDEPDINKSSRFRPRPPHAAVTWLHPNLVCEVS
FTEMTGDGVMRHPSFVGMRNDKNAKKVILEEELAVNEIIGEQSKEGDGMRKNSKEGSSDK
KNYKTMLNPKDKTQVQKVNGHELKFTNLDKLFWPDEKITKRDLINYYEQAAPFILPYLKD
RPQSMNRYPNGIKEEGFYFKDVTDTAPEWAETYLYQSEADGRDRHYLVGKDEATLLYMAN
LGCIEMNPWSSTVGKPDNPTFCIIDLDPDKNTFDQVIETAQLTKQLLDDMAVPSYCKTSG
STGLHIYIPLGNKYNYDQSKEFAHIIVTLIHAELPDYTSLERTVRARKGKMYLDFLQNRP
HATIAAAYSVRPKPGATVSMPLYWDEVKKGLKISDFTLFNAIERMHEQGDIFKPVLGKGI
DLKKVIDTLSKK
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgtcaaaatatcgcgaaaagcgttccgcaggaaaaacaccggaaccctttgga
ggtagatcaagtggaaaggagttgcggttcgtcgtgcagatgcatgatgcttcgcatctg
cattatgatttccggcttgaaatgaacggggtgctcaaaagttgggcggttcccaagggg
ccatctatggatccatctattaaacgcttggccatgatggttgaagatcatccttatgat
taccggaattttgaaggtatcataccaaaaggacagtatgggggtggctcagttatcgtg
tgggatgaagggcgatatgaagctttagctcctgagagcaatgatgttgtaaaaatggat
aagaatcttcgacatcagctttatagcggaaagctcaaattcagattgtatggagaaaaa
ttgaagggagaatttgctttggtaaaagcatacggaagaggaggaaatgaatggctattg
atgaagttggaagatcaatatgcaacaagcaaggatgtcatagcaaatgataaatccgta
ttgtcgggaaagacgatagcggaaatggaaaaatcgcccgataaagtctatggacagcca
gttgttaaaaagaatagcatatcaaaaaataaaggcaagaaaagcaggaatgctgctgaa
ataatcagtaaccagttggaagaagtgcctaaaaagaaaaaggctgagacgcagaaacaa
gcgtataatatcaccgacttgctaaagaaatcaccgaagcaggtcttttatactacggtg
cagcccatgctggcgacgctggtcgacaagtcttttgatgatcaaagctgggtatacgaa
gtgaaatgggacggttatcgtgctgttgcctttatgaaaaatggcgaaatagaactaaaa
tctagaaatgacaaaagcttcaatgaaaagttttatccagtatatgataccctgaaaagc
atcgcgatcaatgccatactcgatggcgagatcgttgtattggaaaaaaatggaaccgcc
aactttgcggccctacaaaactggagaagtgaggcggatggcgatttggtatattatgta
tttgacatcctttggtacgatggaaaagatctaaaaggtctttcgctattggaaagaaaa
gcgattttaaaggaagtaataccgcaaaacgatttgattttattgagtgaacatttcgat
acatcgggcgttggatttttgaatgaagccaaaaaactcggtcttgagggtattatggcc
aaacgcaaggaaagcgtttaccatatacatgagcgttcacctgactggttgaaaataaag
gctaataggcgtcaggaggttgttattggcggttttacaaagaacgaaggctccagcaaa
ctgtttagtagcctattagtaggcttatatgaagataaaaagcttatttataccggaaag
gtcggaacaggattcagtgcaaaattacaacaagagctgatggcgcagttcaaacccttg
gtcacaaaaaatagcccgtttgatgacgaacccgatatcaacaaatcctcacgatttaga
ccccgccctcctcacgccgctgtcacctggctacatcccaacctggtttgcgaagtgagc
tttacagaaatgaccggggacggcgttatgcgacatccctcatttgtcggcatgcgtaac
gataaaaatgccaaaaaagtgattctagaagaagagttggctgttaatgagattatcggc
gaacaatcaaaagagggagatgggatgcgaaaaaatagtaaggaaggcagttcggataag
aaaaactataaaacaatgctaaaccccaaagacaaaacccaggttcagaaggtaaatgga
catgagttaaaatttaccaacctcgataaactattttggcctgacgaaaagatcaccaag
cgcgatttaattaattactatgagcaggctgcaccgtttattttaccataccttaaagat
cgaccacaaagtatgaatcgatacccaaatggtatcaaagaagaagggttctatttcaag
gatgttaccgatacagcaccggaatgggcagaaacctatctttaccaaagtgaggccgat
ggccgtgatcggcattatctggtcggaaaagacgaggctacattgttatatatggctaat
cttggctgtattgaaatgaatccctggagtagtaccgtcggaaaaccggataatccgacc
ttttgtatcattgatctggatccggataaaaatacatttgatcaagttattgaaaccgcc
cagctcaccaaacaacttttagatgatatggcggtaccttcgtattgtaaaacaagtggt
tccactggacttcacatatatataccattaggaaataaatataattacgatcagtccaag
gagtttgcgcatattattgtcaccctgattcatgcggagctacccgactataccagctta
gagcgaactgttcgtgctcggaaaggtaaaatgtatcttgattttcttcaaaatagacca
catgctaccattgctgcagcatattcagtacgtcccaagcctggagcgacagtgtccatg
ccattatattgggatgaagttaaaaaagggttgaaaattagtgatttcaccttgtttaat
gcgattgaaagaatgcatgagcagggtgatatctttaaacctgtattggggaaagggatc
gatctgaaaaaagtaattgatacactctcaaaaaaatag
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