Sphingopyxis sp. MG: C3E99_17090
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Entry
C3E99_17090 CDS
T05382
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spho
Sphingopyxis sp. MG
Pathway
spho03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C3E99_17090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spho03400
]
C3E99_17090 (ligD)
Enzymes [BR:
spho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C3E99_17090 (ligD)
DNA repair and recombination proteins [BR:
spho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C3E99_17090 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AVA15340
UniProt:
A0A2L0VTV4
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All DBs
Position
complement(3728041..3730566)
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AA seq
841 aa
AA seq
DB search
MARRADPLAQYKAKRDFAATPEPAGQVAKGKAAKAEGGRFIVQKHDATRLHYDFRLEADG
VLKSWAVTKGPSADPADKRLAVRTEDHPLAYADFEGAIPKGEYGGGTVMLWDRGTWAPVA
GKSAKDIDRGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAHAGGSDDLVGR
HLTSVLTGRTMAEIAGDVGGAQSLRGAKGAAFTQKMKAAAKHNAAVAKRRAGGGKPPAFR
KPQLATLVDAVPGGNNWFHEIKYDGYRALVAAAGSAVRIHTRNGLDWTDKFAPLAAQFAA
LDLPPCLIDGEIVAYDGAGNPDFSSLQAVIKRGHGAQDADTALNFFAFDLLEEDGKSLAK
LGNLERKERLEALLRAAAPPIAVADHVIGAGERLYTAMCGAGQEGIISKRADAPYAGRRT
RNWVKVKCTRRQEFIIVGWKPSSAKARPFASLLLAQREGDALVYKGNVGTGFDAATMAML
ARKFASRARKTPPLAVERAAARDVRWLTPDLVAEIAFAEYTAGGSVRHASFVGLREDKEA
KDVTPETKQAAPRPTADVRISNRDRVIFPESKATKGDLADYYAAVAPIMLPHMARRPVSL
VRCPQGRAKQCFFQKHDSGSFGPQVHHVPIREKDGGVEDYLYVEDAGGILACVQMGTIEF
HGWGSHVDTLEAPDRMVFDLDPDEGLDFGDVRKAAADLHRQLSDIGLISFAMLSGGKGVH
VVVPLDPGPDWDAHKDFAKRFAEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAI
MPWSARAREGAPVAAPIGWDALADIDSPRHWTIADADALLERAASAELKGWGFARQTLPD
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcgcgccgacccgctcgcgcagtacaaggccaagcgcgacttcgccgccacc
cccgagccggcggggcaggtggcgaagggaaaggcggcgaaggcggaaggcgggcgcttc
atcgtccagaagcacgacgcgacgcgccttcattatgacttccgcctcgaggccgacggt
gtgctcaagagctgggcggtgacgaaggggccgagcgccgatcccgccgacaagcggctc
gcggtgcgcaccgaggatcatccgcttgcctacgccgatttcgagggcgcgatccccaag
ggtgaatatggcggcggcacggtgatgctgtgggaccgcggcacctgggcgccggtcgcg
ggcaagagcgcgaaggacatcgatcgcggccatctgcacttcacgctcgacggcgaacgg
atgaagggcgaatggctactcgtccgcatgaagccgcgcgcgggcgaaaagcgcgagaac
tggctgctgcgcaagatcgacgacgcccatgccggcggcagcgacgatctggtcgggcgc
catctaacgagcgtcctcaccggccgcaccatggccgagatcgcgggcgacgtgggtggc
gcgcagtcgctgcgcggtgcgaagggcgccgccttcacgcagaagatgaaggccgcggcg
aagcataatgcggcggtcgcgaagcgccgcgccggcgggggcaagccgcccgcctttcgc
aagccccagctcgcgacgctcgtcgatgcggtgccgggcggcaacaactggttccacgag
atcaaatatgacggctatcgcgcgctcgtcgcggcggcggggagcgcagtgcgcatccat
acgcgaaacggcctcgactggaccgacaagttcgcgccgctcgccgcgcagttcgccgcg
ctcgacctgccgccgtgcctgatcgacggagagatcgtcgcctatgacggtgcgggcaat
cccgatttctcgtcgctgcaggcggtgatcaagcgcggccatggcgcgcaggatgccgat
acggcgctgaacttcttcgccttcgacctgctcgaagaggatggcaagtcgctggcgaag
ctgggcaatctcgaacgcaaggaacggctcgaagcgctgctgcgcgccgccgcgccgccg
atcgcggtcgccgatcatgtcatcggcgcgggcgaacgcctgtatacggcgatgtgcggc
gcggggcaggaaggcatcatctcgaagcgcgccgacgctccctatgccggccgccggacg
cgcaactgggtcaaggtcaaatgcacccgccgccaggaattcatcatcgtcggctggaag
ccgtcttcggcgaaggcgcgccccttcgcctcgctgctcctcgcgcagcgcgagggcgat
gcgctggtctacaagggcaatgtcggcaccggcttcgacgctgcgacgatggcgatgctg
gcgcgcaagttcgcgagccgtgcgcgcaagaccccgccgctggcggtcgaacgcgcggcg
gcgcgcgacgtccgctggctgacccccgacctcgtcgccgaaatcgccttcgccgaatat
accgccggcggatcggtgcgccacgcgagcttcgtcggcctgcgcgaggacaaggaggcg
aaggacgtgactccggagacgaagcaggcggcgccccgcccgaccgccgacgtgcggatc
agcaaccgcgaccgcgtcatctttcccgaatcgaaggcgaccaagggcgaccttgccgac
tattatgccgcggtcgcgccgatcatgctgccgcacatggcgcgccgtccggtcagcctc
gtccgctgcccgcaaggacgcgccaagcaatgctttttccagaagcatgattcgggatcg
ttcggtccgcaggtccaccatgtcccgatccgcgagaaggacggcggggtcgaggattat
ctctatgtcgaggacgccggcggcatcctcgcctgcgtccagatggggacgatcgaattc
cacggttggggcagccatgtcgacacgctcgaggcgcccgaccggatggtcttcgatctc
gaccccgacgaagggctcgatttcggcgacgtccgcaaggcggcggccgacctccatcgc
cagctttccgacatcggcctgatcagcttcgcgatgctgtcgggcggcaagggggtgcat
gtcgtcgtgccgctcgacccggggccggactgggacgcgcacaaggatttcgcgaagcgc
ttcgccgaagcgctcagcctcgccgagcccgaccgtttcaccgcgacgatgagcaaggcg
aagcgcaagggcaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcgatc
atgccctggtcggcccgcgcccgcgaaggcgcgccggtcgcggcgccgatcggctgggat
gcgctggcggacatcgacagcccgcgccactggacgatcgccgacgccgatgcgctgctc
gaacgcgcggcgagcgccgagctcaagggctggggcttcgcgcgccagacgcttcccgat
ttgtga
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