Sphingopyxis sp. 113P3: LH20_03525 Help Entry LH20_03525        CDS       T04069                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism sphp  Sphingopyxis sp. 113P3 Pathway sphp03030   DNA replication sphp03410   Base excision repair sphp03420   Nucleotide excision repair sphp03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sphp00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     LH20_03525    03410 Base excision repair     LH20_03525    03420 Nucleotide excision repair     LH20_03525    03430 Mismatch repair     LH20_03525  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sphp03032]     LH20_03525    03400 DNA repair and recombination proteins [BR:sphp03400]     LH20_03525 Enzymes [BR:sphp01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      LH20_03525 DNA replication proteins [BR:sphp03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      LH20_03525 DNA repair and recombination proteins [BR:sphp03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      LH20_03525    NER (nucleotide excision repair)     GGR (global genome repair) factors      LH20_03525    MMR (mismatch excision repair)     DNA ligase      LH20_03525   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       LH20_03525 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT DZR_2 RNA_ligase Motif Other DBs NCBI-ProteinID:  ALC11016 UniProt:  A0A0M4CMA4 LinkDB All DBs Position 748485..750641 Genome browser AA seq 718 aa AA seqDB search MSGRMTAVESLTEADAANELMRLAKAIAHHNKLYHAEDSPEISDAEYDALVRRNNAIEEA FPHLVRADSPNRLVGAAVEASPLAKVTHAVRMMSLDNAFAAEDVEEFVARVRRFLNLGEG ETVALTAEDKIDGLSCSLRYEKGELVQAATRGDGTVGEDVTPNVRTIADIPQRLKGAAPD VFEIRGEVYMAKADFAALNERLLAEADDPEKARQFANPRNAAAGSLRQKDAGVTAARPLR FLAHGWGETSEVPEATQRAMMKRIAAWGVPVSPLLERFESVEAVLEHYRTIEAERADMPY DIDGVVYKVDRLDWQARLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGR LTPVTVGGVVVSNVTLHNRDEIGRLGVRPGDRVVVQRAGDVIPQVVENLTRDEPRAAYIF PDHCPVCDSEAVAEEGEVDVRCTGGLICNAQKFERLRHFVSRGALDIEGLGEKSIAEFLE LGWLDKGPADIFRLKNHRDELLEREGWKEKSVDNLLAAIEAKREPDAARLLFGLGIRHVG AVTARDLMKGLGEIARLPGKAAEIRDYLEANPQAEGESEGKYLARKVEAIKSILEVRADG IGVAVGEALGDFFHEPHNRALWDDLLLEVSPPPYVVETRDSEVSGKTVVFTGKLETMSRD EAKAQAEKLGAKAAGSVSAKTDLVVAGPGAGSKLKQAAALGIRVIDEAEWAAIVEAAG NT seq 2157 nt NT seq  +upstreamnt  +downstreamnt atgagcgggcgcatgaccgctgttgaatcgctgaccgaggccgatgccgccaacgagctg atgcggctcgccaaggcgatcgcccatcataacaagctctaccacgccgaagattcgccc gagatcagcgacgcggaatatgatgcgctcgtccggcgcaacaatgcgatcgaagaggcg ttcccgcatctcgtccgcgccgacagcccgaaccggcttgtgggggctgccgtcgaggcg tcgccgctcgcgaaggtcacccatgcggtgcgaatgatgagcctcgacaatgcctttgcg gctgaggacgtcgaggagttcgtcgcccgcgtgcggcgcttcctgaatttgggcgaaggc gagacggtcgccttgaccgccgaggacaagatcgacggcctgtcctgctcgctgcgttac gagaagggcgagcttgtccaggctgcgacccgcggcgatgggacggtgggcgaggatgtg acgccgaacgtgcggacgatcgcggacattccgcagaggctgaagggcgccgcgcccgac gtcttcgagatccggggcgaggtctatatggcgaaagcggatttcgccgcgctcaacgaa cggctccttgccgaagcggatgaccccgaaaaggcccgccagtttgccaatccccgtaat gctgcggcgggttcgctgcgccagaaggatgcgggcgttaccgcggcgcgcccgcttcgc ttccttgcccacggctggggcgagacgagcgaggtgcccgaggcgacgcagcgcgcgatg atgaagcgcatcgcggcttggggcgtgcctgtgtcgccgctgcttgagcggttcgagagt gtcgaggcggtgcttgagcattatcgcacaatcgaggccgaacgggctgacatgccctat gacatcgacggcgtcgtctacaaggtcgaccgcctcgactggcaggcacgtctcggcttt gtcgccaaggcgccaagatgggccattgcccataaattccccgccgagcgcgcgcagacg acgctcgaggccatcgacatccaggtcggccgcaccggcaagctgacccccgtgggccgg ctcacaccggtcacggtcggcggcgtcgtggtgtcgaatgtcacccttcacaaccgcgac gagatcggccgcctcggcgtgcggccgggtgaccgtgtcgtcgtgcagcgcgcaggcgac gtgatcccgcaggtcgtcgaaaatctgacccgcgacgaaccgcgcgcggcctatatcttc cccgaccattgcccggtgtgcgacagcgaggcggtggccgaggagggcgaggtcgacgtg cgctgcacgggcgggctcatctgcaacgctcagaaatttgagcgccttcgccatttcgtg agccgcggcgcgctcgatatagaagggctgggcgagaagagcatcgcggaatttctggag cttggatggctcgacaaggggccggcggacatcttccgactgaagaatcaccgcgatgag ctgctcgagcgcgaggggtggaaggagaagtcggtcgacaatctcctcgccgcgatcgag gcgaaacgcgagcccgatgcggcgcggcttcttttcgggctcggcattcgccatgttggc gcggtgaccgcgcgcgacctgatgaaggggctgggcgagatcgcgcgccttcccgggaaa gcggccgagatccgcgactatctcgaggcgaacccgcaggccgagggggaatccgagggc aaatatctcgcgcgcaaggtcgaggcgatcaagtcgatcctcgaggtgcgggccgacggc atcggcgtcgcggtgggagaggctttgggcgactttttccacgaaccgcacaaccgcgcg ctgtgggacgatcttctccttgaagtttccccgccgccctatgtggtcgaaacgcgcgac agcgaggtgtcgggcaagacggtcgtcttcaccggcaagctcgagacgatgagccgcgac gaggcgaaggcgcaggctgaaaagctcggcgccaaggccgcgggatcggtgagcgccaag accgacctcgtggtcgccggtccgggcgcgggatcgaagctcaagcaggcggcggcgctg gggataagggtcatcgacgaggccgagtgggcggctatcgtcgaagcggcagggtga

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