Sphingopyxis sp. QXT-31: BWQ93_13790
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Entry
BWQ93_13790 CDS
T04913
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphq
Sphingopyxis sp. QXT-31
Pathway
sphq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BWQ93_13790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphq03400
]
BWQ93_13790
Enzymes [BR:
sphq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BWQ93_13790
DNA repair and recombination proteins [BR:
sphq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BWQ93_13790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APZ99436
UniProt:
A0A1P8WZE4
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All DBs
Position
2869682..2872186
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AA seq
834 aa
AA seq
DB search
MARADPLAQYNAKRDFKLTPEPAGKVAKGVGNRFIVQKHDATRLHYDFRLEVDGVLKSWA
VTKGPSADPADKRLAVRTEDHPMSYADFEGVIPKGEYGGGSVMLWDCGTWAPIEGKSAKD
IEKGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVNDAYAGGSDDLVGRQLTSVL
TGRTMAEIAGDEGGEQSLKGAKGQAFAKKMQAAAAHNRKVAKAKPKGKPPKFRPLQLATL
VDAVPTGNGWFHEIKYDGYRAEIAAAGDEVRVYTRNGLDWTDKFLPLVRHIAALGLPPCL
IDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEGTALHFFAFDLLEESGKSLAKLGNLERK
ERLEALLRDAQPPVAVADHVIGAGEKLYAAMCGAAQEGIISKRADAPYLGRRSKSWVKVK
CTRRQEFVIVGWNPSAAKARPFASLLLAQHEGGTLVYKGNVGTGFDAATMAELAKKFARL
ERKTAPLEVDAATARKVHWLKPDLVAEIAFAEFTASGSVRHASFLGLRSDKEAKDVTPEK
RQPAPAPESDVTISSRDRIIFPEAKATKGDLADYYEAVAPLMLPHAARRPISLVRCPQGR
GKKCFFQKHDSGSFGDHVHHVPIREKDGGHEDYLYVDDADGLLACVQMGTIEFHGWGSHV
GALEKPDRMVFDLDPDEGLPFADVKKAATDIRRQLADIGLTSFAMLSGGKGVHVVVPLDP
GHSWDAHKDFSKRFAEALSMAEPDRFIATMSKAKRKGKIFIDYLRNQRGSTAILPYSARA
REGAPVAVPIGWDALAEVDKAGAWTIRDADELLERAAGADLKGWGFVSQRLPDF
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgccgatcccctcgcccaatataatgccaagcgcgatttcaagctgaccccc
gagcccgcgggcaaggtcgcgaagggagtcggcaaccgcttcatcgtccagaagcacgac
gcgacgcggctccactatgatttccggctcgaggtcgacggggtgctcaagagctgggcg
gtgaccaagggtccgagcgccgaccccgccgacaagcgcctcgcggtgcgcaccgaagac
catccgatgagctacgccgatttcgaaggcgtgatccccaagggcgaatatggcggcggc
agcgtaatgctgtgggactgcggcacatgggccccgatcgagggcaagagcgcgaaggac
atcgaaaagggccacctccacttcaccttggacggcgaacgcatgaagggcgaatggctg
ctcgtccgtatgaagccgcgccccggcgagaagcgcgagaactggctgctgcgcaaggtg
aacgacgcttatgcgggcggcagcgacgatctcgtcgggcgccagctcaccagcgtcctc
accggccgcaccatggccgagatcgcgggcgacgagggcggcgaacagtcgctgaagggt
gccaagggccaagccttcgccaaaaagatgcaggccgccgccgcgcacaaccgcaaggtc
gcgaaggccaaacccaaaggcaaacccccgaagttccgcccgctccagctcgcaacgctc
gttgacgccgtacccaccggcaacggctggttccacgagatcaagtacgacggctatcgc
gccgaaatcgccgcagcgggcgacgaggtgcgcgtctacacgaggaacggcctcgactgg
accgacaaattcttgcccctcgtccgccatatcgccgcactgggcctgccgccctgcctg
atcgacggcgagatcgtcgcctatggcaaggacggcaatcccgacttctcctcgctgcaa
gccgtgctcaagcgcggccacggcgcgcaggacgagggcaccgccctccacttcttcgcc
ttcgacctcctcgaagaaagcggcaagagccttgccaaactcggcaatctcgagcgcaag
gaacgcctcgaagcgctgctccgcgacgctcagccccccgtcgcggtcgccgaccatgtc
atcggcgcgggcgagaaactctacgccgcgatgtgcggcgccgcgcaggagggcatcatc
tcgaaacgcgctgacgcgccttaccttggccgccgcagcaagagctgggtcaaggtcaaa
tgcacccgccgtcaggagtttgtgatcgtcggctggaacccctccgcagcgaaggcgcgc
cctttcgcctcgctcctcctcgcccagcatgagggcggcaccctcgtctacaaaggcaat
gtcggcaccggcttcgacgccgcgaccatggccgagctcgcgaaaaaattcgcacggctc
gaacgcaagaccgcgccgttggaggtcgacgccgcgaccgcgcgcaaggtccattggctc
aaacccgatctcgtcgccgaaatcgccttcgccgaattcaccgcgagcggatcggtgcgc
cacgcgagtttcctcggcttgcgcagcgacaaggaggccaaggacgtgacccccgaaaag
cggcaacccgcccccgcacccgaaagcgacgtgacgatcagcagccgcgaccgcatcatc
ttccccgaagccaaggcgaccaagggcgacctcgccgattattatgaagccgtcgccccg
ctgatgctcccccacgccgcgcgccgcccgatcagcctcgtccgctgcccgcagggccgc
ggcaagaaatgcttcttccagaagcacgacagcggctcgttcggcgaccatgttcaccat
gtcccgatccgcgagaaggacggcgggcacgaggattatctctatgtcgacgacgccgac
ggcctgctcgcctgcgtccagatggggacgatcgaattccacggctggggcagccacgtc
ggcgcgcttgaaaagcccgaccgcatggtcttcgacctcgatcccgacgagggcctcccc
tttgccgacgtgaagaaggccgcgaccgacatccgccgccagctcgccgacatcggcctc
accagcttcgcgatgctatcgggcggcaagggcgtgcatgtcgtcgtcccgctcgatccg
ggacacagctgggacgcgcacaaggatttctcgaagcgtttcgccgaggcgctcagcatg
gccgaacccgaccgcttcatcgcgacgatgagcaaggccaagcgcaagggcaagatcttc
atcgattatctgcgcaaccagcgcggcagcaccgcgatcctcccctattcggcccgcgcc
cgcgaaggcgcgcccgtcgcggtcccgatcggctgggacgccctcgccgaggtcgacaag
gcgggggcgtggacgatcagggacgcggacgaactgctcgagcgcgccgcgggagcggac
ctaaaaggctggggcttcgtcagccagagacttcccgatttctga
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