Sphingopyxis sp. QXT-31: BWQ93_16725
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Entry
BWQ93_16725 CDS
T04913
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sphq
Sphingopyxis sp. QXT-31
Pathway
sphq03410
Base excision repair
sphq03430
Mismatch repair
sphq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BWQ93_16725
03430 Mismatch repair
BWQ93_16725
03440 Homologous recombination
BWQ93_16725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphq03400
]
BWQ93_16725
DNA repair and recombination proteins [BR:
sphq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BWQ93_16725
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BWQ93_16725
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BWQ93_16725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
APZ99944
UniProt:
A0A1P8X132
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Position
complement(3463811..3465577)
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AA seq
588 aa
AA seq
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MTDTALGITRSIAGQPWHWRRASADMASENLAPDDLVTQLLLARGVARDDLERQRVPTLR
GFMPDPALFRDMDSAAARLADAVEAKEAITIFGDYDVDGATSAALLVRLLRDLDVPVGAY
IPDRLMEGYGPSGAALVKIGAAGSKLVVTVDCGAQAFEAIAEANAAGVETIIVDHHQCAT
TLPAAFAVVNPNRLDEVPDAAVHGNLAAVGVAFLLGAALLRELRTRGFFANRAEPALIEL
LDLVALGTVADVARLTGFNRALVTQGLKIMARRGNIGLAALMDAARLTKAPTATDMGFAL
GPRINAGGRVGKSDLGVRLLTTSDPDEAAEISQELNRLNEERRAIEAGVLEEALAMSERA
GNAPVAIVAGPGWHPGVIGIVAGRLKEKLHRPAIVIAVDEAGVGKGSGRSISGVDLGAAI
LAAKEMGLLVAGGGHAMAAGLTVAADKLDAFGAFLNERLAADVERASGDRALLIDAVLAP
RGISPLWCEAIESAGPYGAGWPAPRVATGPVRIVEAGIVGTDHVRLIVSGDDGARFKAIA
FRSAETELGQTLLHARGRKLWLAGRAKRDDWGSRPAAELHLEDAAFAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccgctctgggtatcacacgctcgatcgccgggcagccatggcattggcgc
cgcgcgagcgccgacatggcgtcggaaaatctggcgcccgacgatctggtgacgcaattg
ctgctcgcgcgcggggtggcgcgcgacgacctcgagcgccagcgcgtgccgacgctgcgc
ggcttcatgcccgacccggcattgttcagggatatggacagcgccgccgcgcggctcgcc
gatgcggtcgaagccaaagaggcgatcaccatcttcggcgattacgacgtcgacggcgcg
acctcggcggcgttgctcgtgcggctgctgcgcgacctcgacgtgcccgtgggcgcctat
atccccgaccggctgatggagggctatggcccctcgggcgcggcgctggtgaagatcggc
gcggcggggtcgaagctggtcgtcaccgttgattgcggcgcgcaggcgttcgaagcgatc
gccgaggccaatgccgcgggggtcgagacgatcatcgtcgaccatcatcaatgcgcgacg
acgctgcccgcggcctttgcggtggtgaacccgaaccggctcgacgaggtgcccgacgcg
gcggtgcacggcaatctggcggcggtcggggtcgccttcctgctcggcgcggccttgctg
cgcgagcttcgcacgcggggctttttcgcgaatcgggccgagccggcgctgatcgaattg
ctcgacttggtcgcgctgggcaccgtcgccgacgtcgcgcggctgaccgggttcaatcgc
gcgctggtgacgcaggggctgaagatcatggcgcggcgcggaaatatcgggctcgcggcg
ctgatggatgcggcgcggctgaccaaggcgccgacggcgaccgacatgggctttgcgctg
gggccgcggatcaacgcgggcgggcgcgtcggcaagtcggacctcggcgtgcggctgctc
accacctcggaccccgacgaggccgcggagatttcgcaggagctcaatcggctgaacgag
gagcgccgggcgatcgaggcgggggtgctcgaggaagcgctggcgatgagcgagcgcgcg
ggcaatgccccggtcgcgatcgtcgcggggccgggctggcatccgggcgtgatcggcatc
gtcgcgggacggctcaaggagaaattgcaccgcccggcgatcgtgatcgcggtggacgag
gcgggcgtcggcaagggatcggggcgctcgatcagcggcgtcgacctgggcgcggcgatc
cttgccgccaaggaaatggggctgctcgtcgcgggcggcgggcatgcgatggcggcgggg
ctgaccgtcgccgccgacaagctcgatgcgtttggcgcgttcctgaacgaacgcttggcg
gccgatgtcgagcgcgcgagcggcgaccgcgcgctgctgatcgacgcggtgctggcgccg
cgcggaatcagtccgctctggtgcgaggcgatcgagagcgcggggccgtacggcgccggc
tggcccgcgccgcgcgtcgcgacggggccggtgcgaatcgtcgaggcggggatcgtcggc
accgaccatgtccggctgatcgtgtcgggcgacgacggcgcgcgcttcaaggccatcgcc
ttccgcagcgccgagaccgagctggggcagaccctgctccatgcgcgcgggcgcaaatta
tggctcgcgggccgcgcgaaacgcgacgattggggcagccgccccgccgccgaactgcat
ctggaagacgcggcgttcgccgattag
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