Uncultured Sphingopyxis sp. UC10: SPPYR_0042 Help Entry SPPYR_0042        CDS       T05531                                  Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism sphu  Uncultured Sphingopyxis sp. UC10 Pathway sphu03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:sphu00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     SPPYR_0042  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:sphu03400]     SPPYR_0042 Enzymes [BR:sphu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      SPPYR_0042 DNA repair and recombination proteins [BR:sphu03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      SPPYR_0042 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Motif Other DBs NCBI-ProteinID:  SBV31162 UniProt:  A0A1Y5PM91 LinkDB All DBs Position SPPYR:complement(50280..52784) Genome browser AA seq 834 aa AA seqDB search MSRADPLAQYNAKRDFKLTPEPAGKVEKGAGNRFIVQKHDATRLHYDFRLEVDGVLKSWA VTKGPSADPADKRLAVRTEDHPMSYADFEGVIPKGEYGGGSVMLWDRGTWAPVAGKSAKD IEKGHLHFTLDGERMKGEWLLVRMKPRGNEKRENWLLRKVNDAYAGGTDDLVGRQLTSIL TGRTMAEIAGDEGGEQSLKGAKGAAFAKKMAAAAAHNKKVAKAKPKAKLPKFRPLQLATL VDAVPAGNGWFHEIKYDGYRAEIAASGGDVRVYTRNGLDWTDKFAPLVRHIAALDLPPCL IDGEIVAYGKEGNPDFSSLQAVLKRGHGAQDEATRLHFFAFDLLEEDGKSLAKLGNLERK ERLEALLRDAKAPVAVADHVIGAGETLHAAMCGAGQEGIISKRADAAYVGRRTKNWVKVK CTRRQEFVLVGWKPSSTRARPFSSLLLAQHEGGSLVYKGNVGTGFDAGTMADLAKAFAKL ERKTAPLEVDKVAARKVHWLKPELVAEIAFAEFTASGSVRHASFLGLRSDKEAIEVTPEV KQPAPEAQSDVRISSRDRVIFPEAKATKGDLADYYAAIAPLMLPHMARRPVSLVRCPQGR AKKCFFQKHDSGSFGDHVHHVPIKEKDGGHEDYLYIEDADGILACVQMGTIEFHGWDSHV ETLEKPDRMVFDLDPDEDLDFADVKKAALDIRRQLADIGLVSFAMLSGGKGVHVVVPLDP EHGWDAHKDFSKRFAEALSLAEPDRYVATMSKAKRKGKIFIDWLRNQRGSTAIMPYSARA REGAPAAVPIGWDALADARKAGQWTIKDAGELLERAARADLKGWGFASQPLPAF NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt atgtcccgcgctgaccccctcgcccaatataacgccaagcgcgatttcaagctgactccc gagcccgcgggcaaggtcgaaaaaggtgccggcaaccgcttcatcgtccagaagcatgat gcgacgcggctccattacgacttccggctcgaagtcgacggcgtgctcaaaagctgggcg gtcaccaagggcccgagcgccgaccccgccgacaagcgcctcgcggtgcgcaccgaggat cacccgatgtcctacgccgatttcgaaggcgtgatccccaagggcgaatatggcggcggc agcgtgatgctgtgggaccgcggcacctgggcgccggtcgcgggcaagagcgcgaaggac atcgaaaagggccacctccatttcaccctggatggcgagcggatgaagggcgaatggctg ctcgtccgcatgaagccgcgcgggaacgagaagcgcgagaactggctgctccgcaaagtg aacgacgcctatgccggcggcaccgacgacctcgtcgggcgccagcttacgagcatcctc accggccgcaccatggccgagatcgcgggcgacgaaggcggcgaacaatcgctgaagggc gcgaagggggcggcgttcgcgaagaagatggccgccgcggccgcgcacaacaaaaaggtc gccaaggcgaaaccgaaagccaaactccccaaattccgcccgctccagctcgcgacgctc gtcgacgccgtgccggcgggcaacggctggtttcacgagatcaaatatgacggctaccgc gccgagatcgccgcatcgggcggcgacgtgcgggtctacacaaggaatggtctcgactgg accgacaagttcgcgccgctcgtccgccatattgccgcgctcgacctgccgccgtgcctg atcgacggcgagatcgtcgcctatggcaaggagggcaatcccgacttctcctcgctccag gcggtgctcaagcgcggccatggcgcgcaggacgaggccacccggctccacttcttcgcc ttcgacctgctcgaagaagacggcaagtcgctggcgaagctcggcaatctcgaacgcaag gaacggctcgaagccctgctccgcgacgcgaaggcgccggtcgcggtcgccgaccatgtc atcggcgcgggcgagacgcttcacgccgcgatgtgcggcgcggggcaggaaggcatcatc tcgaaacgcgccgacgcggcttacgtcggccgccgcaccaaaaactgggtgaaggtcaaa tgcacgcggcggcaggagttcgtcctcgtcggctggaagccctcctcgaccagggcgcgc cccttctcgtcgctgctcctcgcgcagcacgagggcggcagtctcgtctacaagggcaat gtcggcaccggcttcgatgccggcaccatggccgacctcgccaaggcattcgcgaaactc gaacgcaagaccgcgccgctcgaggtcgacaaagtcgccgcacgcaaggttcactggctg aaacccgaactcgtcgccgaaatcgccttcgccgaatttaccgcgagcggatcggtgcgc cacgcgagcttcctcggcctgcgcagcgacaaggaggcgatagaggtgacccccgaagtg aaacagcccgcgcccgaagcgcaaagcgacgtcaggatcagcagccgcgaccgcgtcatc tttcccgaagccaaagcgaccaagggcgatctcgccgactattacgccgcgatcgccccg ctcatgctcccgcacatggcgcggcgcccggtcagcctcgtccgctgtccgcaggggcgc gcgaagaaatgctttttccagaagcatgactcgggcagcttcggcgaccatgtccatcac gtcccgatcaaggagaaggacggcgggcacgaggattatctctatatcgaggatgccgac ggcatcctcgcctgcgtccagatggggacgatcgaatttcacggctgggacagccatgtc gaaaccctcgaaaagcccgaccgcatggtgttcgacctcgatcccgacgaagacctcgat ttcgccgatgtcaaaaaggccgcgctcgacatccgccgccagctcgccgacatcggcctc gtcagcttcgcgatgctctcgggcggcaagggcgtgcatgtcgtcgtgccgctcgatccc gagcatggctgggacgcgcacaaggatttctcaaaacgcttcgccgaggcgctgagcctc gccgagcccgaccgctatgtcgcgacgatgagcaaggcgaagcgcaagggcaagatcttc atcgactggctgcgcaaccagcgcggcagcaccgcgatcatgccctattcggcgcgcgcg cgcgaaggcgccccggccgcggtcccgatcggctgggacgcgctcgccgatgcccgaaag gcggggcagtggacgatcaaggacgccggcgaactgctcgaacgcgccgcgcgcgccgac ctcaagggctggggtttcgccagccagcccctccccgctttctga

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