Sphingobacterium sp. CZ-2: E3D81_15400
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Entry
E3D81_15400 CDS
T06166
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3D81_15400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphz03400
]
E3D81_15400 (mfd)
Enzymes [BR:
sphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3D81_15400 (mfd)
DNA repair and recombination proteins [BR:
sphz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3D81_15400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SUV3_C
Motif
Other DBs
NCBI-ProteinID:
QBR13486
UniProt:
A0A4P7DUL4
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All DBs
Position
3523313..3526648
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AA seq
1111 aa
AA seq
DB search
MNIQELLTKYSNSTQVKALQQSIQGKRPKIHLKGLVGSADAMVAAACYQLEKRLNVFILP
THEDASYFLSDLESLFDKQILFFPASYRKPYEFTQLDSAHVLQRAETLSSLNQNSELPKI
VVTYPEAIAEKVINKQDLEKNTLPITQNTKLSIDFINEFLYEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDEIESIRTFDIENQLSVNKIHTVTIVPNVQAKFLSNNHI
SLLEYIDKNSVVWIKDVQFTLDILKDGYKKASQFWKALTEKDLKANPELLDPRFTFTDEK
NFNAMLFEYPIIEFGKQFFYNADEQLEFDTHPQPSFNKDFNLLIHNFKENEKHGIHNYIF
SDSTKQIERIYAILDDLDKTVSFTPIYKALREGFRDDVLKAACYTDHQIFDRYYKYKRKK
GYERSQAITLKELGELKPGDFITHIDHGVGKYAGLEKVDVNGKTQEMIRLVYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIMLYAKRKAQTGN
AFSPDTYLQRELEASFIYEDTPDQEKATNDLKRDMESPHPMDRLVCGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHFRTFSERLKGFPVNIDYINRFKSSKQIKDTLKRLEE
GKVDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNESLIQEAVSFELDRGGQVFFIHNRVAD
LPQLGMLIRKLVPGARVGIAHGQLEGDELEDVMLKFINHEYDVLVATTIIEAGLDIPNAN
TIMINHAHMFGLSDLHQMRGRVGRTNKKAFCYLMSPPLSTLTNEAYKRLSAIEEFSELGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYNKILDEAVQELKDDEFGDLFADETNR
KYVNFTQIDTDLEVLIPDEYVTNISERYNLYNDIAKLKDESQLQAFEQSLMDRFGPVPGP
VYELFNTLRLQWLGKEIGLEKISFKKDTLKGFFVSNPKSSYYQSEKFGQVLAFVQKHGSI
ANLKEVKGQLRIAVNNVNSIEYAIELLKEMA
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgaacattcaagaactattaacaaaatacagtaattccactcaagtaaaagccttacaa
caaagcattcaagggaagagacccaagatccatttaaagggattggtgggttcggcggat
gccatggttgctgccgcatgttatcaactggaaaaaagattaaatgtattcatccttcct
acacatgaggatgcctcttatttcttgagcgacctggaaagtctttttgataaacagatc
ttattttttccggcttcttaccgaaaaccctacgaatttacacaactggatagcgcgcat
gtgcttcagcgggctgagaccttgagttctttgaaccaaaattcggaactccctaaaatt
gtggtcacctatcccgaagccattgcggaaaaggtgatcaacaaacaggatctggaaaag
aacaccctgcccattacacagaacaccaaactcagtatcgatttcatcaacgaattttta
tacgaatacgattttgagcgggtagattttgtctatgaacctggacagttcgccatccgt
gggggaattgtggatatcttctctttttccaacgacctcccctatcgcatcgaattcttt
ggggatgaaattgagagcatccgaaccttcgatattgaaaatcagttatccgtcaataaa
atccataccgtaacgatcgtacctaatgtacaagcgaaattcttgtcgaacaaccatatt
tctttattggaatatatcgataaaaactccgtagtatggataaaggacgttcaattcacc
ttggatatcctgaaggatggttataaaaaagcatcccaattttggaaagctttaacagag
aaagacctgaaagcaaatccggaattgttagatccgcgatttacattcaccgatgagaag
aatttcaatgcaatgttgttcgaatatcccatcatcgaatttggaaaacaatttttttac
aatgcggatgaacaactagaattcgatacacatccacaaccttcgtttaacaaggacttc
aatctgttgatccataacttcaaggaaaacgagaaacatggcatccacaattacattttt
tccgattccaccaaacaaattgaacgaatttatgcgattttagatgatctggataagacc
gtaagttttaccccaatctacaaagcgcttagagaaggttttagggatgatgttctaaaa
gccgcctgctataccgatcatcagatctttgatcgttattataaatacaagcggaaaaag
ggttacgaacgttcgcaagccatcacattaaaagaacttggggaattaaaaccaggtgat
ttcattacccatatcgatcatggcgttggtaagtatgcggggttggaaaaagtagatgtg
aatggtaaaacgcaggaaatgattcggttggtttatgcggataatgacctcctatatgtc
aacatcaactccctgaacaggatttccaaatattccggaaaagagggcactgttcccaag
atgaacaagttaggaacagatgcttgggacaaactaaagaaaacgacgaaaaagaaggtc
aaggatattgcccgcgacctgatcatgttatatgccaaacgcaaggcccaaaccggtaat
gcgttcagtccggacacctatttgcagcgcgagctggaagcctcctttatctatgaggat
accccagatcaggaaaaggcaaccaatgatctgaaaagagatatggagtcccctcatcct
atggaccgcttggtctgtggtgatgttggtttcggaaaaacagaagttgccatccgtgcg
gcgtttaaagccgtagcagatagcaaacaggtggctgttttagtccctacaacgatcctt
gcgctacagcatttccgaaccttctccgaaaggctgaaaggttttccggtgaatatcgat
tacatcaaccgtttcaaatccagcaaacagatcaaggacaccttgaaaagactggaagaa
ggaaaagtggatatcattatcggaacccatcgcttggtgagcaaggatgtgaaatttaag
gaccttggattgatgatcatcgatgaggaacagaaattcggggtatcggtaaaggagaaa
ctgaaagtcatgcgtgcaaacgtcgactccctgaccttgaccgcaacacctatcccacga
accttacacttctccctaatgggagcaagggatttaagcattatttctaccccaccaccg
aacagacagcctgtacagacagaacttcatgtgtttaatgaaagtctgatccaggaagcg
gttagctttgaactggaccgaggcggacaggtgttcttcatccataatcgggtggcagac
cttcctcaattaggcatgttgatccggaaattggtcccaggagcgagagttggtatagcg
catgggcaattggaaggtgatgaactggaagatgtaatgttgaagttcatcaatcatgaa
tacgatgttttggtcgctaccacgattatcgaagcgggcctagatataccaaatgccaat
acgatcatgatcaaccatgcccatatgtttggattgagcgatcttcaccaaatgcgtggt
cgtgtgggacggaccaacaaaaaggcattctgttacctgatgagcccaccattgtccacc
ttgaccaatgaggcatacaaaaggttatcggccattgaagaattctcggaattaggttca
ggattcaatgtggcgatgcgcgatctggatatccgcggttcagggaaccttttgggagca
gaacaatcgggattcatcgcagagattggttttgagatgtacaataagatattggatgaa
gcggttcaggagctaaaagacgatgagtttggtgatctatttgccgatgagacaaatcgt
aaatatgtaaactttacccagatcgatacggatctggaagtattgatcccggatgagtat
gtaaccaatatatctgaaagatataacctgtacaatgatattgctaaactgaaggacgag
tcgcaattacaggcatttgaacaatccttaatggatcgattcggaccagtaccagggcca
gtttacgaactgttcaataccttaaggttgcaatggctgggcaaggaaatcggattggag
aaaatctcctttaagaaagataccttaaaaggattttttgtaagcaatccgaaatcgagc
tattaccagtctgagaaattcgggcaggtattggcatttgttcagaagcatggaagtatc
gcgaatctgaaagaagtgaaaggtcaattaaggattgcggtcaacaatgtcaatagcatt
gagtatgctatagagctgctgaaagaaatggcataa
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