Spirosoma sp. KCTC 42546: EXU85_04395
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Entry
EXU85_04395 CDS
T06164
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EXU85_04395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spik03021
]
EXU85_04395
Transcription machinery [BR:
spik03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EXU85_04395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_24
HTH_40
GerE
HTH_38
HTH_Mga
HTH_5
HTH_30
HTH_DeoR
HTH_11
HTH_10
HTH_AsnC-type
TetR_N
HTH_23
HTH_17
HTH_28
LexA_DNA_bind
ASFV_360
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
QDK77869
UniProt:
A0A514ZTF6
LinkDB
All DBs
Position
1043827..1044402
Genome browser
AA seq
191 aa
AA seq
DB search
MSLHLLTDNELLALLREDDEQAFRELYDRYWYKMYVIAHRKLRRKEVAEELAQELFVMIW
QKRESLRVINLQAFLGVSLKNLMIDYIRRNIQEEHYLDQLQQFFPAETFATIEAVQMNEL
SEAIQSTLAKLPEKTREIFILNRFEHLTIREIAQRLNLSEKTIEYHLSRSTTFLRQNLRD
FMTVWVLLLIS
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcacttgttaaccgacaatgagttgttggccctgcttcgagaagacgacgag
caggcgttcagggagttatatgatcgatactggtataaaatgtacgtaattgctcatcgt
aaacttcggcggaaagaagtggctgaagagttggcgcaggagctttttgtaatgatctgg
cagaaacgggaatccctgcgggtcattaatttacaggcgtttttaggggtgtcgctcaag
aatctgatgatcgactacatccgccgaaatattcaggaggagcattacctcgatcaactt
cagcagtttttccccgccgaaacctttgccactatagaggccgtacagatgaatgaactc
tccgaagcgattcagagtacattggccaaacttcccgaaaaaacccgggaaattttcatt
ctcaaccggttcgaacaccttaccattcgggaaattgcccagcgactgaacctgtccgaa
aaaacaatagaataccacctttcccggtcaaccacctttctacgtcagaatctacgcgat
ttcatgaccgtctgggtgctgttattaatctcctga
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