Skermania piniformis: KV203_14640
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Entry
KV203_14640 CDS
T07358
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spin
Skermania piniformis
Pathway
spin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KV203_14640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spin03400
]
KV203_14640
Enzymes [BR:
spin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KV203_14640
DNA repair and recombination proteins [BR:
spin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KV203_14640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QXQ13119
LinkDB
All DBs
Position
complement(3169668..3172046)
Genome browser
AA seq
792 aa
AA seq
DB search
MPTSLTFGDSRVELTNLDKVLYPLTGTTKADVIDYYVQISAAMLPHIAGRPVTRKRWPNG
VDQPAFFEKNLAPHAPTWLEWRTIRHKARDTRYPVVTTPAGLAWLGQQAALEVHVPQWRF
AGDEIGSATRLVFDLDPGEGAGLTECAEVAIAVRDMVAEIGLVAYPVTSGSKGIHLYVPL
DRRLSPDGASTVARQVATNLELLHPTLVTATMAKAVRTGKVFLDWSQNSPAKTTIAPYSL
RGRPRPTVAAPRTWAEIENPAQLSHLEFPEVLARVASDGDLLHALDPPLSSGAGIPAGSG
PDALADYRAKRDSRRTPEPIPAAVPTPGADDRFVIQEHHARRLHYDLRLERDGVLVSWAV
PKGVPTSGTRNRLAVRTEDHPLEYLTFHGSIPRGEYGGGEMTIWDTGRYATEKWRLDAGE
VIVTLRGGRVDGRYALIRTGGKNWLMHLMSPRNEPAKAAADPSAAEENAADESTAGSTEA
ELPRSLAPMLATAGSVAELPADGWSFEAKWDGYRLIVEVDRGALTLRSRAGNVVTDRYPG
LGELAAALAEHRVVLDGEVVVHDPRGRPDFELLQADGTRAQFLAFDVLYLDGTSLLDKRY
RDRRRILEALATAVPALTVPPQLTGTGAQALAASRAAGWEGVVGKRNDSVYLAGKRSPDW
LKHKHWRTADVVIGGWRRGRGARAGTLGALLVGVPDDAGVRFVGRVGTGFTDAALADLAR
RLAPLRRSTSPFVGELPADDRSDAVWVDPRLAGVVRFAEWTGSGRLRHPSWRGLRDERAA
APGQPDDPPSTR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccagtctgaccttcggcgacagccgagtggagctgaccaacctggacaaggtg
ctctacccgctgaccgggaccaccaaagccgacgtgatcgactactacgtgcagataagt
gcggcgatgctaccgcatatcgccggtcgtccggtcactcgcaagcggtggccgaacggg
gtggatcagccggcgttcttcgagaagaatctggccccacacgccccgacctggctggag
tggcggacgatccgacacaaggcccgcgatacccgctacccggtggtaaccacaccggcc
gggctcgcttggctcggccagcaggccgcgctggaggtgcacgtgccgcagtggcgtttc
gccggggacgagatcggctccgcgacccggctggtcttcgatctcgatccgggggagggc
gccggactcaccgagtgcgccgaggtggcgatcgcggttcgggacatggtggccgagatc
ggactcgtcgcctacccggttaccagcgggagcaaagggatccacctctacgtgccgctg
gatcggcggctgtccccggacggcgcctctacggttgcccgccaggtcgccacaaatctg
gagctcctgcatcccacgctggtgacggcgaccatggccaaggcggtgcgcacggggaag
gtcttcctggactggagccagaacagcccggcgaagaccaccatcgcgccgtactcgtta
cgcggccggccgcggccgacggtcgcggcaccgcgtacctgggccgagatcgaaaatccc
gcacagctatcgcacctggagttccccgaggtgctggcccgggtcgcgagcgacggcgac
ctgctccacgcgttggatccgccgctgtcgtcgggcgcgggaattccggctgggtccggc
ccggacgcgctcgccgactatcgcgcgaaacgcgattcgcgtcggacgccggagccgata
cccgccgccgtccccaccccgggcgccgacgatcggttcgtgatccaggaacatcacgcc
cgccggctgcactacgacctgcgcctggaacgcgacggcgtgctggtgtcctgggcggtc
cccaagggggtgcccacgtcggggacccggaaccggctggccgtgcggaccgaggatcac
ccgttggagtacctgaccttccacgggtcgatcccgcgcggggagtacggcggcggtgag
atgacgatctgggacaccggccggtacgcgaccgagaagtggcgactcgacgcgggggag
gtgatcgtgacattgcggggcgggcgggtcgacggacggtacgcgctgatccggacgggc
gggaagaactggctgatgcacctgatgtcgcctcgaaacgagccggcgaaagccgccgcc
gatccgagcgctgccgaggagaacgctgccgacgagagcactgccggtagcaccgaggcc
gagttgccccgcagcctcgcgccgatgctcgccaccgcgggttcggtcgccgaattgccg
gccgacgggtggagcttcgaagcgaaatgggacggataccggttgatcgtcgaggtcgac
cgcggcgcgctcaccctgcgcagccgggccggcaacgtggtcaccgatcggtacccgggc
ctgggcgaactggcagccgcgctggccgaacatcgggtggtgctcgacggcgaggtcgtc
gtgcacgatccgcgcggccggcccgacttcgagctcttgcaggccgacggcacccgggcg
cagttcctcgccttcgacgtgctgtacctggacggcacgtccctgctcgacaagcgttac
cgcgaccggcgccgaatactcgaggcgctggcgacggcggttccggcgctgaccgtgccg
ccgcagcttaccgggaccggcgcgcaggcattggcggccagtcgcgccgccggttgggaa
ggtgtcgtcgggaagcggaacgactcggtgtacctggcgggcaaacgcagtccggactgg
ctgaaacacaagcattggcgcaccgccgacgtggtgatcggcggttggcggcggggccgg
ggagcgcgggccggcaccctcggggcattgctggtcggcgtgccggacgacgccggcgtc
cggttcgtcggtcgggtcggcaccggcttcaccgacgcggcgctggccgatctggctcga
cggctcgccccgctgcgccgctcgaccagcccgttcgtcggtgagctgccggccgacgat
cgttccgatgcggtctgggtggacccgcggttggccggggtggtccgcttcgccgagtgg
accggatcgggtcgactgcgccacccctcgtggcgcggtctgcgcgacgagcgggcggcg
gcgcccggtcagccggacgacccaccgagcaccaggtaa
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