Spirillospora sp. NBC_01491: OHA34_29585
Help
Entry
OHA34_29585 CDS
T09711
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spiq
Spirillospora sp. NBC_01491
Pathway
spiq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spiq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OHA34_29585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spiq03400
]
OHA34_29585 (mfd)
Enzymes [BR:
spiq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OHA34_29585 (mfd)
DNA repair and recombination proteins [BR:
spiq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OHA34_29585 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WUU88583
LinkDB
All DBs
Position
6352798..6356367
Genome browser
AA seq
1189 aa
AA seq
DB search
MTLSGLVDLACTDPGLARALDTFTGDGPRADHEVVAPSALWPILAAALSRRLDGGVVLAV
TATGREAEDLTTALTSLLDPERVSHFPAWETLPHEKLSPRSDTVGQRLAVLRRLVHPGAA
DGAGGRLNVVVTPIRAVLQPIVSGLADLEPLRLRSGDDADLDEAVRGLVDAGYHRVDLVE
KRGEIAVRGGILDVFPPTEEHPLRVEFWGDTIEEIRYFKAADQRSLEVAQDGLWAPPCRE
LPLTATVRERARLLAERHPALEEILGRIADGDTIEGMEAFSPVLADSMELLTDLLPEGSA
LLVCEPERIRTRSVELVRTSQEFLEASWVNAAAGGEAPIDLGAAAFRSLEEVRLHSAELG
LTRWTVTALTSDRVIAGEAGAGASDEAPAPDGAGAALRLGVQPAEAYRGDTGRVVADLKG
WIDGGWRVVLVTAGHGPAERLVQLVGEEGLGAVLTEIAEPPRPALVNVATGLLENGFSWD
SIKLAVLTETDLSGQKSSTKDMRRMPSRRRGGIDPLQLRAGDYVVHEQHGVGRYVEMVSR
TVQGATREYLILEYAKSDRLFVPTDQLEELTRYVGGEAPSLHRLGGADWQKAKSRARKAV
KQIAGELIRLYSARMASPGHPFGPDTPWQRELEDAFPYMETPDQLAAIDEVKGDMERPVP
MDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFSERFGAFPVVVK
PISRFQTDKEIEETLRGLADGVVDVVVGTHRILSSQTRFKNLGLVIIDEEQRFGVEHKEE
LKRLRTQVDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPVLTFVGPYEEKQIAAA
IRRELLREGQVFFVHNRVRSIDKVAANLARLVPEARIATAHGQMNENQLERVMVDFWEKN
YDVLVATTIVESGLDVPNANTLIVDRADMYGLSQLHQLRGRVGRGRERAYSYFLYPPEMP
LSETAHERLATLAQHTEIGAGMFVAMKDLEIRGAGNILGAEQSGHVAGVGFDLYVRMVGE
AVRDLKEGGAEPAAVETKVELPVDAHLPHEYVPGERLRLDAYRRIAAITSEDEIAGVHEE
LKDRFGPLPVPVLNLLEVARFRAKARKAGLTDVTAQGTFVKFAPADLPDSKQVRLQRLYP
KSIIKPATRTLLVPAPKTAPLGGRPLRDQELLKWATDVVQALFLEPARA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttctggactggttgacctggcgtgcaccgatcccgggctggcacgcgccctc
gacaccttcacgggcgacgggccgcgcgccgatcacgaggtcgtcgcgccgtccgcgctg
tggccgatcctggcggcggcgctgagccgccggctggacggcggcgtggtgctggccgtg
accgccaccgggcgggaggccgaggacctgaccacggcgctgaccagcctgctcgacccc
gagcgggtgtcgcacttcccggcgtgggagacgctgccgcacgagaagctgtcgccgcgc
tccgacacggtcgggcagcggctggcggtgctgcgcaggctggtgcacccgggcgccgcc
gacggcgccgggggccgcctcaacgtggtcgtgaccccgatccgcgcggtgcttcagccg
atcgtgtccgggctcgccgacctggaaccgctgcggctgcggtccggcgacgacgccgac
ctggacgaggccgtccggggcctggtcgacgccggctaccaccgcgtcgacctggtcgag
aagcgcggcgagatcgcggtgcgcggcggcatcctggacgtgttcccgcccaccgaggag
cacccgctccgggtggagttctggggcgacacgatcgaggagatccgctacttcaaggcc
gccgaccagcgctcgctggaggtggcgcaggacgggctgtgggcgccgccgtgccgcgag
ctgccgctgaccgcgacggtccgcgagcgggcccggctgctggccgagcggcatccggcg
ctggaggagatcctcggccggatcgccgatggcgacaccatcgagggcatggaggcgttc
tcgcccgtcctcgccgacagcatggagctgctcaccgacctgctgccggagggctcggcg
ctgctggtgtgcgagcccgagcggatccgcacccgctcggtcgagctcgtccgcaccagc
caggagttcctggaggcgagctgggtcaacgccgccgccgggggagaggcgccgatcgat
ctcggcgccgccgcgttccgctcgctggaggaggtccgcctgcacagcgccgagctgggc
ctgacgcgctggacggtcacggcgctgacctccgatcgcgtcatcgccggggaggcgggc
gcgggggcctcggacgaggcgccggcccccgacggcgcgggggccgcgctccggctcggg
gtgcagccggccgaggcgtaccggggcgacaccggacgggtggtcgccgacctcaagggc
tggatcgacggcggctggcgggtcgtgctggtcaccgccgggcacgggccggccgaacgg
ctcgtccagctcgtcggggaggagggcctcggcgccgtcctgaccgagatcgccgagccg
ccgcgcccggcgctggtcaacgtggcgaccgggctgctggagaacggcttcagctgggac
tcgatcaagctcgcggtgctgaccgagaccgacctgtccgggcagaagtcctccaccaag
gacatgcggcggatgccgtcccggcggcgcggcggcatcgacccgctccagctccgggcg
ggcgactacgtggtgcacgagcagcacggcgtgggccggtacgtcgagatggtcagccgc
accgtgcagggcgcgacccgcgagtacctgatcctcgagtacgccaagagcgaccggctg
ttcgtcccgaccgaccagctcgaggagctgacccgctacgtcggcggcgaggcgcccagc
ctgcaccggctcggcggcgccgactggcagaaggccaagtcgcgggcgcgcaaggcggtc
aagcagatcgccggcgagctgatccggctctactcggcgcggatggcgagcccggggcac
cccttcggccccgacaccccgtggcagcgcgagctggaggacgccttcccgtacatggag
acgcccgaccagctcgccgcgatcgacgaggtcaagggcgacatggagaggcccgtcccg
atggaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtccgcgcc
gcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgccgacgacgctgctc
gtccagcagcacctgtcgaccttctccgagcggttcggcgcgttcccggtggtggtcaag
ccgatctcccggttccagaccgacaaggagatcgaggagacgctgcgcggcctcgccgac
ggcgtcgtcgacgtggtcgtcgggacgcaccgcatcctgtcctcgcagacccggttcaag
aacctcggcctggtgatcatcgacgaggagcagcggttcggcgtcgagcacaaggaggag
ctgaagcggctgcgcacgcaggtggacgtgctggcgatgtcggccaccccgatcccgcgc
acgctggagatgggcctgaccggcatccgcgagatgtccaccatcctcaccccgcccgag
gagcggcacccggtgctgaccttcgtcgggccgtacgaggagaagcagatcgccgcggcg
atccgccgcgagctgctgcgcgagggccaggtgttcttcgtgcacaaccgggtcaggtcg
atcgacaaggtcgcggccaacctcgcccggctcgtcccggaggcgcggatcgccaccgcg
cacgggcagatgaacgagaaccagctcgaacgcgtcatggtcgacttctgggagaagaac
tacgacgtcctggtcgcgaccacgatcgtggagtccgggctggacgtgcccaacgccaac
accctgatcgtcgaccgcgccgacatgtacgggctctcgcagctgcaccagctccgcggc
cgggtcgggcggggccgcgagcgcgcctactcctacttcctgtacccgccggagatgccg
ctcagcgagaccgcgcacgagcggctcgccacgctcgcgcagcacaccgagatcggcgcg
ggcatgttcgtggcgatgaaggacctggagatccgcggcgccggcaacatcctcggcgcc
gagcagtccgggcacgtggccggggtcggcttcgacctgtacgtccggatggtgggcgag
gcggtccgcgacctgaaggagggcggtgccgagccggcggccgtcgagaccaaggtcgaa
ctgcccgtcgacgcgcacctgccgcacgagtacgtgccgggcgagcggctgcggctggac
gcctaccggcggatcgccgcgatcacctccgaggacgagatcgccggggtgcacgaggag
ctgaaggaccggttcgggccgctgccggtcccggtgctcaacctgctggaggtcgcgcgg
ttccgggccaaggcgcgcaaggccgggctgaccgacgtcaccgcgcagggcaccttcgtc
aagttcgcgccggccgacctgcccgactccaagcaggtgcggttgcagcggctctatccc
aagagcatcatcaagcccgcgacgaggacgctgctggtgccggcgcccaagaccgcaccg
ctcggcgggcgcccgctgcgcgaccaggagctgctgaaatgggccaccgacgtggtccag
gcactgttcctggagcccgcgcgcgcctag
DBGET
integrated database retrieval system
